(Q33821576)

29 July 2017

Detecting remotely related proteins by their interactions and sequence similarity (English)

1 reference

29 July 2017

7

Andrej Sali

0 references

Marc A. Martí‐Renom

object named as

Marc A Marti-Renom

Francesc Xavier Avilés Puigvert

4

0 references

object named as

Francesc X Avilés

6

0 references

author name string

Jordi Espadaler

1

1 reference

29 July 2017

Ramón Aragüés

2

1 reference

29 July 2017

Narayanan Eswar

3

1 reference

29 July 2017

Enrique Querol

5

1 reference

29 July 2017

Baldomero Oliva

8

1 reference

29 July 2017

language of work or name

English

0 references

publication date

9 May 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

1 reference

29 July 2017

102

1 reference

29 July 2017

7151-7156

1 reference

29 July 2017

20

1 reference

A probabilistic view of gene function.

29 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Structural characterization of genomes by large scale sequence-structure threading

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Alignment of protein sequences by their profiles

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

The Database of Interacting Proteins: 2004 update

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

SCOP database in 2004: refinements integrate structure and sequence family data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

MODBASE, a database of annotated comparative protein structure models, and associated resources.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

SMART 4.0: towards genomic data integration

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

The Pfam protein families database

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

MIPS: analysis and annotation of proteins from whole genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Predicting protein functions from redundancies in large-scale protein interaction networks

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

The TB structural genomics consortium: a resource for Mycobacterium tuberculosis biology.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Predicting protein function from protein/protein interaction data: a probabilistic approach

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

The CATH database: an extended protein family resource for structural and functional genomics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

BIND: the Biomolecular Interaction Network Database

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

The third dimension for protein interactions and complexes.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Transitive functional annotation by shortest-path analysis of gene expression data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Protein interactions: two methods for assessment of the reliability of high throughput observations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Functional organization of the yeast proteome by systematic analysis of protein complexes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs".

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Annotation transfer for genomics: measuring functional divergence in multi-domain proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Protein structure prediction and structural genomics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Intrinsic errors in genome annotation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Generating protein interaction maps from incomplete data: application to fold assignment

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Lethality and centrality in protein networks

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Enhanced genome annotation using structural profiles in the program 3D-PSSM

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Structural genomics: beyond the human genome project

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Detecting protein function and protein-protein interactions from genome sequences

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Conservation of gene order: a fingerprint of proteins that physically interact

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Progress in protein structure prediction

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1129109

Probabilistic scoring measures for profile-profile comparison yield more accurate short seed alignments.

4 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500831102

Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500831102

Exhaustive enumeration of protein domain families.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500831102

How Well is Enzyme Function Conserved as a Function of Pairwise Sequence Identity?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500831102

An information-based sequence distance and its application to whole mitochondrial genome phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500831102

Global protein function prediction from protein-protein interaction networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500831102

Individual Comparisons by Ranking Methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500831102

Detection of homologous proteins by an intermediate sequence search

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500831102

Completeness in structural genomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500831102

Bridging structural biology and genomics: assessing protein interaction data with known complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0500831102

21 January 2018

1 reference

12 December 2020

Functional links between proteins

1 reference

PubMed

12 December 2020

Practical limits of function prediction

1 reference

PubMed

12 December 2020

100,000 protein structures for the biologist

1 reference

PubMed

12 December 2020

Identifiers

DOI

10.1073/PNAS.0500831102

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference