(Q33833646)

29 July 2017

title

NAViGaTing the micronome--using multiple microRNA prediction databases to identify signalling pathway-associated microRNAs (English)

1 reference

29 July 2017

1 reference

4

Igor Jurisica

1 reference

29 July 2017

Elize A Shirdel

1

1 reference

29 July 2017

Wing Xie

series ordinal

2

1 reference

29 July 2017

Tak W Mak

series ordinal

3

1 reference

29 July 2017

language of work or name

English

0 references

publication date

25 February 2011

1 reference

29 July 2017

1 reference

29 July 2017

volume

6

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29 July 2017

issue

2

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29 July 2017

page(s)

e17429

1 reference

Creative Commons Attribution 4.0 International

29 July 2017

copyright license

start time

25 February 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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MicroRNA-155 modulates the interleukin-1 signaling pathway in activated human monocyte-derived dendritic cells

4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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MicroRNA-10a binds the 5'UTR of ribosomal protein mRNAs and enhances their translation

4 July 2018

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Using galaxy to perform large-scale interactive data analyses

4 July 2018

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miR-148 targets human DNMT3b protein coding region

4 July 2018

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The microRNAs miR-373 and miR-520c promote tumour invasion and metastasis

4 July 2018

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Endogenous human microRNAs that suppress breast cancer metastasis

4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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The role of site accessibility in microRNA target recognition

4 July 2018

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MicroRNA targeting specificity in mammals: determinants beyond seed pairing

4 July 2018

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A mammalian microRNA expression atlas based on small RNA library sequencing

4 July 2018

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A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly

4 July 2018

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Unequal evolutionary conservation of human protein interactions in interologous networks

4 July 2018

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Distance constraints between microRNA target sites dictate efficacy and cooperativity

4 July 2018

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4 July 2018

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Transcripts targeted by the microRNA-16 family cooperatively regulate cell cycle progression

4 July 2018

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NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

4 July 2018

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Natural selection on human microRNA binding sites inferred from SNP data

4 July 2018

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Signalling through Class I PI3Ks in mammalian cells

4 July 2018

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A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes

4 July 2018

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The evolution of phosphatidylinositol 3-kinases as regulators of growth and metabolism

4 July 2018

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4 July 2018

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Beyond PTEN mutations: the PI3K pathway as an integrator of multiple inputs during tumorigenesis

4 July 2018

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From genomics to chemical genomics: new developments in KEGG

4 July 2018

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miRBase: microRNA sequences, targets and gene nomenclature

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

microRNA target predictions across seven Drosophila species and comparison to mammalian targets

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Combinatorial microRNA target predictions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs

4 July 2018

1 reference

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4 July 2018

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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Substrate requirements for let-7 function in the developing zebrafish embryo

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

4 July 2018

Human MicroRNA targets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Fast and effective prediction of microRNA/target duplexes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

MicroRNAs: small RNAs with a big role in gene regulation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Evidence for dynamically organized modularity in the yeast protein-protein interaction network

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Specificity of microRNA target selection in translational repression

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

MicroRNAs: genomics, biogenesis, mechanism, and function

4 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

4 July 2018

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0017429

MicroRNA targets in Drosophila

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Prediction of mammalian microRNA targets

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Identification of Drosophila MicroRNA targets

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

The UCSC Table Browser data retrieval tool

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

MicroRNAs and small interfering RNAs can inhibit mRNA expression by similar mechanisms

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

siRNAs can function as miRNAs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

A biochemical framework for RNA silencing in plants

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Prediction of plant microRNA targets

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

A microRNA in a multiple-turnover RNAi enzyme complex

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Both natural and designed micro RNAs can inhibit the expression of cognate mRNAs when expressed in human cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

The human genome browser at UCSC

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Alu repeats and human genomic diversity

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

An extensive class of small RNAs in Caenorhabditis elegans

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Identification of novel genes coding for small expressed RNAs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

KEGG: kyoto encyclopedia of genes and genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Complete suboptimal folding of RNA and the stability of secondary structures.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Identification of common molecular subsequences

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Isolation and genetic characterization of cell-lineage mutants of the nematode Caenorhabditis elegans

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Mutations that lead to reiterations in the cell lineages of C. elegans

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

A hierarchy of regulatory genes controls a larva-to-adult developmental switch in C. elegans

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045450

Two genetic circuits repress the Caenorhabditis elegans heterochronic gene lin-28 after translation initiation

4 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0017429

The Caenorhabditis elegans hunchback-like gene lin-57/hbl-1 controls developmental time and is regulated by microRNAs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0017429

The C elegans hunchback homolog, hbl-1, controls temporal patterning and is a probable microRNA target.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0017429

A short history of a short RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0017429

Fast folding and comparison of RNA secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0017429

The Genome Knowledgebase: a resource for biologists and bioinformaticists.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0017429

A faster algorithm for betweenness centrality*

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0017429

A note on two problems in connexion with graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0017429

The HSSP database of protein structure-sequence alignments

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21364759

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21364759

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0017429

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference