(Q33836652)

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Expression profiling of the wheat pathogen Zymoseptoria tritici reveals genomic patterns of transcription and host-specific regulatory programs

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scholarly article

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Europe PubMed Central

PubMed publication ID

29 July 2017

Expression profiling of the wheat pathogen Zymoseptoria tritici reveals genomic patterns of transcription and host-specific regulatory programs (English)

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

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1 reference

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inferred from title

Zymoseptoria tritici

object named as

Zymoseptoria tritici

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inferred from title

object named as

Tiffany Y Hsu

4

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object named as

Ronny Kellner

1

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Eva H Stukenbrock

object named as

Eva H Stukenbrock

6

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author name string

Amitava Bhattacharyya

2

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Stephan Poppe

3

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Rachel B Brem

5

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Europe PubMed Central

PubMed publication ID

29 July 2017

publication date

14 May 2014

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Genome Biology and Evolution

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

6

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

6

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

1353-1365

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Transcriptional reprogramming of wheat and the hemibiotrophic pathogen Septoria tritici during two phases of the compatible interaction.

1 reference

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4 July 2018

Genome wide association identifies novel loci involved in fungal communication

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Breakage-fusion-bridge cycles and large insertions contribute to the rapid evolution of accessory chromosomes in a fungal pathogen.

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4 July 2018

Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts

1 reference

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4 July 2018

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

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4 July 2018

Coevolution and life cycle specialization of plant cell wall degrading enzymes in a hemibiotrophic pathogen

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Defining the predicted protein secretome of the fungal wheat leaf pathogen Mycosphaerella graminicola.

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Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi

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4 July 2018

Analysis of the bread wheat genome using whole-genome shotgun sequencing

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4 July 2018

Genome evolution in filamentous plant pathogens: why bigger can be better

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4 July 2018

clusterProfiler: an R package for comparing biological themes among gene clusters.

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Tomato immune receptor Ve1 recognizes effector of multiple fungal pathogens uncovered by genome and RNA sequencing

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4 July 2018

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

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4 July 2018

NGS QC Toolkit: a toolkit for quality control of next generation sequencing data

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4 July 2018

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

1 reference

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4 July 2018

The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species

1 reference

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4 July 2018

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079195

4 July 2018

Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079195

4 July 2018

Ultra-fast sequence clustering from similarity networks with SiLiX.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079195

4 July 2018

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

1 reference

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4 July 2018

Whole-genome and chromosome evolution associated with host adaptation and speciation of the wheat pathogen Mycosphaerella graminicola

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079195

4 July 2018

Differential expression analysis for sequence count data

1 reference

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4 July 2018

Linking the emergence of fungal plant diseases with ecological speciation

1 reference

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4 July 2018

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

1 reference

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4 July 2018

Genome sequencing and analysis of the model grass Brachypodium distachyon

1 reference

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4 July 2018

The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079195

4 July 2018

Circos: an information aesthetic for comparative genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079195

4 July 2018

Meiosis drives extraordinary genome plasticity in the haploid fungal plant pathogen Mycosphaerella graminicola

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079195

4 July 2018

Fungal effector proteins

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4 July 2018

SMART 6: recent updates and new developments

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4 July 2018

A rapid bootstrap algorithm for the RAxML Web servers

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4 July 2018

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

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4 July 2018

Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079195

4 July 2018

Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis

1 reference

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RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees

1 reference

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4 July 2018

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

1 reference

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4 July 2018

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

1 reference

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4 July 2018

Supernumerary chromosomes in filamentous fungi

1 reference

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4 July 2018

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1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079195

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Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4079195

4 July 2018

Host range of a plant pathogenic fungus determined by a saponin detoxifying enzyme

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU101

21 January 2018

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1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU101

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1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU101

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https://api.crossref.org/works/10.1093%2FGBE%2FEVU101

21 January 2018

Maize Tumors Caused by Ustilago maydis Require Organ-Specific Genes in Host and Pathogen

1 reference

https://pubmed.ncbi.nlm.nih.gov/24920004

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An ABC transporter and a cytochrome P450 of Nectria haematococca MPVI are virulence factors on pea and are the major tolerance mechanisms to the phytoalexin pisatin

1 reference

https://pubmed.ncbi.nlm.nih.gov/24920004

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Migration patterns among global populations of the pathogenic fungus Mycosphaerella graminicola

1 reference

https://pubmed.ncbi.nlm.nih.gov/24920004

12 December 2020

based on heuristic

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1 reference

https://pubmed.ncbi.nlm.nih.gov/24920004

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/GBE/EVU101

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

ResearchGate publication ID

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