(Q33860768)

29 July 2017

title

RNApdbee--a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs (English)

1 reference

29 July 2017

Maciej Antczak

1

0 references

Jacek Błażewicz

Jacek Blazewicz

6

0 references

Marta Szachniuk

Marta Szachniuk

7

0 references

Ryszard Adamiak

Ryszard W Adamiak

5

0 references

Mariusz Popenda

3

Mariusz Popenda

1 reference

29 July 2017

2

Tomasz Zok

1 reference

29 July 2017

4

Piotr Lukasiak

1 reference

29 July 2017

language of work or name

English

0 references

publication date

25 April 2014

1 reference

29 July 2017

published in

Nucleic Acids Research

1 reference

29 July 2017

volume

42

1 reference

29 July 2017

issue

Web Server issue

1 reference

29 July 2017

page(s)

W368-72

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

29 July 2017

copyright license

start time

10 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Visualizing the ai5γ group IIB intron

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

Efficient alignment of RNA secondary structures using sparse dynamic programming

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

RNAlyzer--novel approach for quality analysis of RNA structural models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

Automated 3D structure composition for large RNAs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

R-CHIE: a web server and R package for visualizing RNA secondary structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

Web 3DNA--a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

FASTR3D: a fast and accurate search tool for similar RNA 3D structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

VARNA: Interactive drawing and editing of the RNA secondary structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

RNA2D3D: a program for generating, viewing, and comparing 3-dimensional models of RNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

From knotted to nested RNA structures: a variety of computational methods for pseudoknot removal

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

PseudoViewer: web application and web service for visualizing RNA pseudoknots and secondary structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

Tools for the automatic identification and classification of RNA base pairs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

Dynalign: an algorithm for finding the secondary structure common to two RNA sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

5 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

RNA movies: visualizing RNA secondary structure spaces

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086112

Fast folding and comparison of RNA secondary structures

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKU330

RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKU330

Quantitative analysis of nucleic acid three-dimensional structures.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKU330

21 January 2018

Identifiers

DOI

10.1093/NAR/GKU330

1 reference

journals/nar/AntczakZPLABS14

29 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_wzhxoyals5bdnlbwak4v25bawy

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/wzhxoyals5bdnlbwak4v25bawy

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

4086112

1 reference

29 July 2017

1 reference