(Q33868221)

English

The surprising negative correlation of gene length and optimal codon use--disentangling translational selection from GC-biased gene conversion in yeast.

scientific article

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scholarly article

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21481245%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

The surprising negative correlation of gene length and optimal codon use--disentangling translational selection from GC-biased gene conversion in yeast (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21481245%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

1

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21481245%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

author name string

Nina Stoletzki

1

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

publication date

11 April 2011

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21481245%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

BMC Evolutionary Biology

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21481245%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

11

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21481245%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

93

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21481245%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

https://scigraph.springernature.com/pub.10.1186/1471-2148-11-93

0 references

Protein rates of evolution are predicted by double-strand break events, independent of crossing-over rates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Hotspots of biased nucleotide substitutions in human genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Mutagenesis from meiotic recombination is not a primary driver of sequence divergence between Saccharomyces species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Conflicting selection pressures on synonymous codon use in yeast suggest selection on mRNA secondary structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

High-resolution mapping of meiotic crossovers and non-crossovers in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

A genome-wide view of the spectrum of spontaneous mutations in yeast.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

The impact of recombination on nucleotide substitutions in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Mapping meiotic single-strand DNA reveals a new landscape of DNA double-strand breaks in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Background selection in single genes may explain patterns of codon bias

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Synonymous codon usage in Escherichia coli: selection for translational accuracy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

GC-biased segregation of noncoding polymorphisms in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Selective and mutational patterns associated with gene expression in humans: influences on synonymous composition and intron presence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Intense and highly localized gene conversion activity in human meiotic crossover hot spots

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Patterns of Heteroduplex Formation Associated With the Initiation of Meiotic Recombination in the Yeast Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

On the genetic basis of variation and heterogeneity of DNA base composition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Distribution of meiotic recombination sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Widespread selection for local RNA secondary structure in coding regions of bacterial genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Translational selection and yeast proteome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Biased gene conversion: implications for genome and sex evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

In vivo introduction of unpreferred synonymous codons into the Drosophila Adh gene results in reduced levels of ADH protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Evolution of synonymous codon usage in metazoans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Linkage limits the power of natural selection in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Integrating genomics, bioinformatics, and classical genetics to study the effects of recombination on genome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Population, evolutionary and genomic consequences of interference selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Interactions between natural selection, recombination and gene density in the genes of Drosophila.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Gene expression and molecular evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

The correlation between intron length and recombination in drosophila. Dynamic equilibrium between mutational and selective forces.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

The many faces of mismatch repair in meiosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

The effects of Hill-Robertson interference between weakly selected mutations on patterns of molecular evolution and variation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Dissecting the regulatory circuitry of a eukaryotic genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cerevisiae and Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Relationship between transcription and initiation of meiotic recombination: toward chromatin accessibility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Clustering of meiotic double-strand breaks on yeast chromosome III

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Molecular evolution between Drosophila melanogaster and D. simulans: reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Synonymous codon bias is related to gene length in Escherichia coli: selection for translational accuracy?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Reduced natural selection associated with low recombination in Drosophila melanogaster.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Reduced synonymous substitution rate at the start of enterobacterial genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

The double-strand-break repair model for recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Codon usage and tRNA content in unicellular and multicellular organisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Errors and alternatives in reading the universal genetic code.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Codon preferences in free-living microorganisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

The selection-mutation-drift theory of synonymous codon usage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Analysis of a gene conversion gradient at the HIS4 locus in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096941

5 July 2018

Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-93

21 January 2018

Intragenic Hill-Robertson interference influences selection intensity on synonymous mutations in Drosophila.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-93

21 January 2018

Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-93

21 January 2018

A single determinant dominates the rate of yeast protein evolution

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-93

21 January 2018

Recombination at work for meiosis

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-93

21 January 2018

Biased gene conversion affects patterns of codon usage and amino acid usage in the Saccharomyces sensu stricto group of yeasts.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-93

21 January 2018

A relationship between GC content and coding-sequence length.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-93

21 January 2018

Effects of GC content and mutational pressure on the lengths of exons and coding sequences

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-93

21 January 2018

Association of Mre11p with double-strand break sites during yeast meiosis.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-93

21 January 2018

Translational selection and molecular evolution

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-93

21 January 2018

Patterns of Base Composition Within the Genes of Drosophila melanogaster

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-93

21 January 2018

The effect of linkage on limits to artificial selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/21481245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The relationship between homology length and crossing over during the repair of a broken chromosome

1 reference

https://pubmed.ncbi.nlm.nih.gov/21481245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Selection conflicts, gene expression, and codon usage trends in yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/21481245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Neutral effect of recombination on base composition in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/21481245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Assessing the determinants of evolutionary rates in the presence of noise

1 reference

https://pubmed.ncbi.nlm.nih.gov/21481245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recombination and mammalian genome evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/21481245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hill-Robertson interference in Drosophila melanogaster: reply to Marais, Mouchiroud and Duret

1 reference

https://pubmed.ncbi.nlm.nih.gov/21481245

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2148-11-93

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21481245%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

Dimensions Publication ID

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-11-93

9 September 2019

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21481245%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21481245%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

ResearchGate publication ID

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