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RNA bulges as architectural and recognition motifs
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scholarly article
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stated in
Europe PubMed Central
PubMed ID
10745015
retrieved
29 July 2017
review article
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Europe PubMed Central
title
RNA bulges as architectural and recognition motifs
(English)
1 reference
stated in
Europe PubMed Central
PubMed ID
10745015
retrieved
29 July 2017
author name string
Hermann T
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed ID
10745015
retrieved
29 July 2017
Patel DJ
series ordinal
2
1 reference
stated in
Europe PubMed Central
PubMed ID
10745015
retrieved
29 July 2017
publication date
1 March 2000
1 reference
stated in
Europe PubMed Central
PubMed ID
10745015
retrieved
29 July 2017
published in
Structure
1 reference
stated in
Europe PubMed Central
PubMed ID
10745015
retrieved
29 July 2017
volume
8
1 reference
stated in
Europe PubMed Central
PubMed ID
10745015
retrieved
29 July 2017
issue
3
1 reference
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Europe PubMed Central
PubMed ID
10745015
retrieved
29 July 2017
page(s)
R47-54
1 reference
stated in
Europe PubMed Central
PubMed ID
10745015
retrieved
29 July 2017
cites work
RNA folds: insights from recent crystal structures
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Stitching together RNA tertiary architectures
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Tertiary Motifs in RNA Structure and Folding
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7 January 2021
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Structural motifs in RNA.
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7 January 2021
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Major groove accessibility of RNA
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Crossref
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7 January 2021
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Structure of tau exon 10 splicing regulatory element RNA and destabilization by mutations of frontotemporal dementia and parkinsonism linked to chromosome 17
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Proton NMR and structural features of a 24-nucleotide RNA hairpin
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Crystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage
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Solution structure of the donor site of a trans-splicing RNA
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7 January 2021
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Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex
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7 January 2021
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Molecular recognition in the bovine immunodeficiency virus Tat peptide-TAR RNA complex
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7 January 2021
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The crystal structure of the dimerization initiation site of genomic HIV-1 RNA reveals an extended duplex with two adenine bulges
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7 January 2021
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A small metalloribozyme with a two-step mechanism
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7 January 2021
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Crystal structure of a lead-dependent ribozyme revealing metal binding sites relevant to catalysis
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NMR solution structure of the lead-dependent ribozyme: evidence for dynamics in RNA catalysis
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7 January 2021
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Crystal structure of a group I ribozyme domain: principles of RNA packing
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7 January 2021
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A magnesium ion core at the heart of a ribozyme domain
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7 January 2021
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Crystal structure of an RNA bacteriophage coat protein–operator complex
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7 January 2021
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Crystal structure of an RNA aptamer-protein complex at 2.8 A resolution
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7 January 2021
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Saccharide-RNA recognition in an aminoglycoside antibiotic-RNA aptamer complex
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7 January 2021
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Solution structure of the tobramycin-RNA aptamer complex
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Saccharide-RNA recognition in a complex formed between neomycin B and an RNA aptamer
1 reference
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Crossref
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7 January 2021
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inferred from DOI database lookup
RNA architecture dictates the conformations of a bound peptide
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Crossref
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7 January 2021
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Anchoring an extended HTLV-1 Rex peptide within an RNA major groove containing junctional base triples
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Exploration of metal ion binding sites in RNA folds by Brownian-dynamics simulations
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
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Tackling Tat.
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reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
A 1.3-A resolution crystal structure of the HIV-1 trans-activation response region RNA stem reveals a metal ion-dependent bulge conformation
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
The bend in RNA created by the trans-activation response element bulge of human immunodeficiency virus is straightened by arginine and by Tat-derived peptide
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
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Conformation of the TAR RNA-Arginine Complex by NMR Spectroscopy
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
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The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
Dissection of the proposed base triple in human immunodeficiency virus TAR RNA indicates the importance of the Hoogsteen interaction
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
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Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex
1 reference
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Crossref
reference URL
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7 January 2021
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Deep penetration of an alpha-helix into a widened RNA major groove in the HIV-1 rev peptide-RNA aptamer complex
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
Aminoglycoside binding to the hammerhead ribozyme: a general model for the interaction of cationic antibiotics with RNA
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
Docking of cationic antibiotics to negatively charged pockets in RNA folds
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
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Role REVersal: understanding how RRE RNA binds its peptide ligand
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
Adaptive recognition in RNA complexes with peptides and protein modules
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
Saccharide-RNA recognition
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
Small molecules that selectively block RNA binding of HIV-1 Rev protein inhibit Rev function and viral production
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
Modeling RNA-ligand interactions: the Rev-binding element RNA-aminoglycoside complex.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
Inhibition of HIV-1 Rev-RRE interaction by diphenylfuran derivatives
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
An inhibitor of the Tat/TAR RNA interaction that effectively suppresses HIV-1 replication
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Binding of Hoechst 33258 to the TAR RNA of HIV-1. Recognition of a pyrimidine bulge-dependent structure
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Inhibitors of protein-RNA complexation that target the RNA: specific recognition of human immunodeficiency virus type 1 TAR RNA by small organic molecules
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Inhibition of HIV-1 Tat-TAR interaction by diphenylfuran derivatives: effects of the terminal basic side chains
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Bulge-specific cleavage in transactivation response region RNA and its DNA analogue by neocarzinostatin chromophore
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
Effect of ribonucleotide substitution on nucleic acid bulge recognition by neocarzinostatin
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
Non-Watson-Crick base pairs in RNA-protein recognition
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
HIV-1 Rev regulation involves recognition of non-Watson-Crick base pairs in viral RNA.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Selective optimization of the Rev-binding element of HIV-1.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
Molecular recognition in the FMN-RNA aptamer complex
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Solution structure of a substrate for the archaeal pre-tRNA splicing endonucleases: the bulge-helix-bulge motif
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
Crystal structure of a conserved ribosomal protein-RNA complex
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
A detailed view of a ribosomal active site: the structure of the L11-RNA complex
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
Structural characteristics of the stable RNA introns of archaeal hyperthermophiles and their splicing junctions.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
Properties of H. volcanii tRNA intron endonuclease reveal a relationship between the archaeal and eucaryal tRNA intron processing systems.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
Crystal structure and evolution of a transfer RNA splicing enzyme
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structure of a bacterial 30S ribosomal subunit at 5.5 A resolution
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
based on heuristic
inferred from DOI database lookup
Placement of protein and RNA structures into a 5 A-resolution map of the 50S ribosomal subunit
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
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7 January 2021
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inferred from DOI database lookup
X-ray crystal structures of 70S ribosome functional complexes
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900110-6
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/S0969-2126(00)00110-6
1 reference
stated in
Europe PubMed Central
PubMed ID
10745015
retrieved
29 July 2017
PubMed ID
10745015
1 reference
stated in
Europe PubMed Central
PubMed ID
10745015
retrieved
29 July 2017
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