(Q33886663)

29 July 2017

title

Evaluating ortholog prediction algorithms in a yeast model clade (English)

1 reference

29 July 2017

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Antonis Rokas

2

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author name string

Leonidas Salichos

series ordinal

1

1 reference

29 July 2017

language of work or name

English

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publication date

13 April 2011

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29 July 2017

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29 July 2017

volume

6

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29 July 2017

issue

4

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29 July 2017

page(s)

e18755

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Complete bacteriophage transfer in a bacterial endosymbiont (Wolbachia) determined by targeted genome capture

29 July 2017

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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Natural history and evolutionary principles of gene duplication in fungi

28 July 2018

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Assessing performance of orthology detection strategies applied to eukaryotic genomes

28 July 2018

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Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hits

28 July 2018

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28 July 2018

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28 July 2018

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Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts

28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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Orthologs, paralogs, and evolutionary genomics

28 July 2018

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Functional genomic analysis of the rates of protein evolution

28 July 2018

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Inparanoid: a comprehensive database of eukaryotic orthologs

28 July 2018

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Genome evolution in yeasts

28 July 2018

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Structure, function and evolution of multidomain proteins

28 July 2018

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Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

28 July 2018

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The Ashbya gossypii Genome as a Tool for Mapping the Ancient Saccharomyces cerevisiae Genome

28 July 2018

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Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of the new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and Zygotorulaspora

28 July 2018

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Comprehensive analysis of orthologous protein domains using the HOPS database

28 July 2018

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

28 July 2018

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Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

28 July 2018

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RIO: analyzing proteomes by automated phylogenomics using resampled inference of orthologs

28 July 2018

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Automated ortholog inference from phylogenetic trees and calculation of orthology reliability

28 July 2018

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28 July 2018

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28 July 2018

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The use of gene clusters to infer functional coupling

28 July 2018

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Predicting function: from genes to genomes and back

28 July 2018

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28 July 2018

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Synteny conservation and chromosome rearrangements during mammalian evolution

28 July 2018

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28 July 2018

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Molecular evidence for an ancient duplication of the entire yeast genome

28 July 2018

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Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli

28 July 2018

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Exploring the Mycoplasma capricolum genome: a minimal cell reveals its physiology

28 July 2018

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Sampling properties of DNA sequence data in phylogenetic analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3076445

Distinguishing Homologous from Analogous Proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3076445

Basic local alignment search tool

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3076445

28 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0018755

Automatic clustering of orthologs and inparalogs shared by multiple proteomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0018755

Detecting putative orthologs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0018755

Automatic genome-wide reconstruction of phylogenetic gene trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0018755

Predicting gene function by conserved co-expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0018755

Genome-scale approaches to resolving incongruence in molecular phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0018755

The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0018755

Simultaneous Bayesian gene tree reconstruction and reconciliation analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0018755

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0018755

The diversity and evolution of circadian clock proteins in fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0018755

The closest BLAST hit is often not the nearest neighbor

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0018755

Using orthologous and paralogous proteins to identify specificity determining residues

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21533202

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0018755

1 reference

29 July 2017

0 references

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29 July 2017

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