(Q33900447)

29 July 2017

title

Balancing energy and entropy: a minimalist model for the characterization of protein folding landscapes (English)

1 reference

29 July 2017

0 references

3

Cecilia Clementi

1 reference

29 July 2017

Payel Das

1

1 reference

29 July 2017

Silvina Matysiak

series ordinal

2

1 reference

29 July 2017

language of work or name

English

0 references

publication date

8 July 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

number of pages

6

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

29 July 2017

volume

102

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29 July 2017

issue

29

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29 July 2017

page(s)

10141-10146

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COMPUTING: Screen Savers of the World Unite!

29 July 2017

cites work

1 reference

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Three-body interactions improve the prediction of rate and mechanism in protein folding models

5 July 2018

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The effects of nonnative interactions on protein folding rates: theory and simulation

5 July 2018

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Simulation, experiment, and evolution: understanding nucleation in protein S6 folding

5 July 2018

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5 July 2018

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Orientational potentials extracted from protein structures improve native fold recognition

5 July 2018

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Comparison of the transition state ensembles for folding of Im7 and Im9 determined using all-atom molecular dynamics simulations with phi value restraints

5 July 2018

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Folding a protein in a computer: An atomic description of the folding/unfolding of protein A

5 July 2018

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The Jigsaw Puzzle Model: Search for Conformational Specificity in Protein Interiors

5 July 2018

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A thermodynamic and kinetic analysis of the folding pathway of an SH3 domain entropically stabilised by a redesigned hydrophobic core

5 July 2018

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Understanding protein folding with energy landscape theory. Part II: Quantitative aspects

5 July 2018

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Absolute comparison of simulated and experimental protein-folding dynamics

5 July 2018

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The origins of asymmetry in the folding transition states of protein L and protein G.

5 July 2018

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Unspecific hydrophobic stabilization of folding transition states

5 July 2018

1 reference

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Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse

5 July 2018

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Constructing, verifying, and dissecting the folding transition state of chymotrypsin inhibitor 2 with all-atom simulations

5 July 2018

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5 July 2018

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Kinetics, thermodynamics and evolution of non-native interactions in a protein folding nucleus

5 July 2018

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Experiment and theory highlight role of native state topology in SH3 folding

5 July 2018

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Go-ing for the prediction of protein folding mechanisms

5 July 2018

1 reference

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Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures

5 July 2018

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A theoretical search for folding/unfolding nuclei in three-dimensional protein structures

5 July 2018

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Protein structure prediction by global optimization of a potential energy function.

5 July 2018

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Important role of hydrogen bonds in the structurally polarized transition state for folding of the src SH3 domain

5 July 2018

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Folding dynamics of the src SH3 domain

5 July 2018

1 reference

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Theory of protein folding: the energy landscape perspective

5 July 2018

1 reference

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How to derive a protein folding potential? A new approach to an old problem

5 July 2018

1 reference

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Evolution-like selection of fast-folding model proteins

5 July 2018

1 reference

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5 July 2018

How does a protein fold?

1 reference

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Spin glasses and the statistical mechanics of protein folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177359

Mapping the transition state and pathway of protein folding by protein engineering

5 July 2018

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Optimal protein-folding codes from spin-glass theory

5 July 2018

1 reference

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Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect

5 July 2018

1 reference

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Optimal combination of theory and experiment for the characterization of the protein folding landscape of S6: how far can a minimalist model go?

5 July 2018

1 reference

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Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

21 January 2018

1 reference

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The folding and dimerization of HIV-1 protease: evidence for a stable monomer from simulations

21 January 2018

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Quantifying the roughness on the free energy landscape: entropic bottlenecks and protein folding rates

21 January 2018

1 reference

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Switching two-state to three-state kinetics in the helical protein Im9 via the optimisation of stabilising non-native interactions by design.

21 January 2018

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Speeding protein folding beyond the G(o) model: how a little frustration sometimes helps

21 January 2018

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Random-energy model: An exactly solvable model of disordered systems

21 January 2018

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Comparison of two optimization methods to derive energy parameters for protein folding: perceptron and Z score.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177359

Structural and energetic consequences of disruptive mutations in a protein core

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1177359

Interplay among tertiary contacts, secondary structure formation and side-chain packing in the protein folding mechanism: all-atom representation study of protein L

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16006532

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Native and non-native interactions along protein folding and unfolding pathways

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16006532

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0409471102

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference