(Q33905888)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21595876%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

title

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21595876%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21595876%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

Brett J Baker

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21595876%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

Jillian Banfield

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21595876%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

author name string

Brian C Thomas

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21595876%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

Steven W Singer

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21595876%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

publication date

19 May 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21595876%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21595876%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

volume

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21595876%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

issue

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21595876%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

page(s)

R44

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21595876%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 2.0 Generic

1 February 2020

copyright license

start time

1 May 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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28 July 2018

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Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins

28 July 2018

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Ironing out the wrinkles in the rare biosphere through improved OTU clustering

28 July 2018

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28 July 2018

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AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature.

28 July 2018

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Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

28 July 2018

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Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly

28 July 2018

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The Sequence Alignment/Map format and SAMtools

28 July 2018

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Fast and accurate short read alignment with Burrows-Wheeler transform

28 July 2018

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Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

28 July 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

28 July 2018

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Insights into the diversity of eukaryotes in acid mine drainage biofilm communities.

28 July 2018

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The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing

28 July 2018

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The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

28 July 2018

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A renaissance for the pioneering 16S rRNA gene

28 July 2018

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MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences

28 July 2018

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

28 July 2018

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28 July 2018

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28 July 2018

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Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities

28 July 2018

1 reference

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Urban aerosols harbor diverse and dynamic bacterial populations

28 July 2018

1 reference

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28 July 2018

1 reference

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Microbial diversity in the deep sea and the underexplored "rare biosphere"

28 July 2018

1 reference

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28 July 2018

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Rapid quantitative profiling of complex microbial populations

28 July 2018

1 reference

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28 July 2018

1 reference

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Comparison of acid mine drainage microbial communities in physically and geochemically distinct ecosystems.

28 July 2018

1 reference

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28 July 2018

1 reference

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A molecular view of microbial diversity and the biosphere

28 July 2018

1 reference

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Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR

28 July 2018

1 reference

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Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species

28 July 2018

1 reference

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Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

28 July 2018

1 reference

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Search and clustering orders of magnitude faster than BLAST

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219967

Metagenomic sequencing of an in vitro-simulated microbial community

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219967

FastTree 2--approximately maximum-likelihood trees for large alignments

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219967

Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219967

Metagenomic study of the oral microbiota by Illumina high-throughput sequencing.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219967

Community-wide analysis of microbial genome sequence signatures

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219967

SOAP2: an improved ultrafast tool for short read alignment

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219967

Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) bacteria in acid mine drainage biofilms

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219967

Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219967

What is the expectation maximization algorithm?

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219967

Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219967

Community structure and metabolism through reconstruction of microbial genomes from the environment

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219967

29 October 2018

Identifiers

DOI

10.1186/GB-2011-12-5-R44

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21595876%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

1 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21595876%20AND%20SRC:MED&resulttype=core&format=json

1 February 2020

PubMed publication ID

21595876

1 reference