(Q33908086)

29 July 2017

title

Expanded methyl-sensitive cut counting reveals hypomethylation as an epigenetic state that highlights functional sequences of the genome (English)

1 reference

Correction for Colaneri et al., Expanded methyl-sensitive cut counting reveals hypomethylation as an epigenetic state that highlights functional sequences of the genome

29 July 2017

corrigendum / erratum

0 references

6

Shyamal D Peddada

1 reference

29 July 2017

Alejandro Colaneri

1

1 reference

29 July 2017

Nickolas Staffa

2

1 reference

29 July 2017

David C Fargo

3

1 reference

29 July 2017

Yuan Gao

4

1 reference

29 July 2017

Tianyuan Wang

5

1 reference

29 July 2017

Lutz Birnbaumer

7

1 reference

29 July 2017

language of work or name

English

0 references

publication date

20 May 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

published in

1 reference

29 July 2017

volume

108

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29 July 2017

issue

23

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29 July 2017

page(s)

9715-9720

1 reference

The UCSC Genome Browser database: update 2011

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

A species-generalized probabilistic model-based definition of CpG islands

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

Developmental programming of CpG island methylation profiles in the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

DNA methylation landscapes: provocative insights from epigenomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

Vertebrate conserved non coding DNA regions have a high persistence length and a short persistence time.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

Genome-wide identification of estrogen receptor alpha-binding sites in mouse liver

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

CpG island mapping by epigenome prediction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

CpGcluster: a distance-based algorithm for CpG-island detection

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

CpG islands in vertebrate genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

CpG-rich islands and the function of DNA methylation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

Number of CpG islands and genes in human and mouse

28 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1105713108

Comprehensive analysis of CpG islands in human chromosomes 21 and 22

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1105713108

Genome-scale relationships between cytosine methylation and dinucleotide abundances in animals

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1105713108

Prediction of CpG-island function: CpG clustering vs. sliding-window methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1105713108

Sp1 sites in the mouse aprt gene promoter are required to prevent methylation of the CpG island

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1105713108

Optimized design and data analysis of tag-based cytosine methylation assays

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1105713108

Identification of a methylation imprint mark within the mouse Gnas locus

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1105713108

ORegAnno: an open-access community-driven resource for regulatory annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1105713108

CpG islands influence chromatin structure via the CpG-binding protein Cfp1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1105713108

CpG distribution patterns in methylated and non-methylated species

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

Structure, function and regulation of mammalian DNA methyltransferase.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3111303

29 October 2018

Identifiers

DOI

10.1073/PNAS.1105713108

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference