(Q33911778)

30 July 2017

title

Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins (English)

1 reference

30 July 2017

1 reference

Sophia Tsoka

6

0 references

John M. Hancock

object named as

John M Hancock

8

0 references

Shiri Freilich

3

object named as

Shiri Freilich

1 reference

30 July 2017

7

Christos A Ouzounis

1 reference

30 July 2017

Chrysanthi Ainali

1

1 reference

30 July 2017

Michelle Simon

2

1 reference

30 July 2017

Octavio Espinosa

4

1 reference

30 July 2017

Lee Hazelwood

5

1 reference

30 July 2017

publication date

25 May 2011

1 reference

30 July 2017

published in

BMC Evolutionary Biology

1 reference

30 July 2017

volume

11

1 reference

30 July 2017

page(s)

142

1 reference

The Pfam protein families database

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

The Universal Protein Resource (UniProt) in 2010

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Metabolic evolution suggests an explanation for the weakness of antioxidant defences in beta-cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Selectome: a database of positive selection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

McKusick's Online Mendelian Inheritance in Man (OMIM)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

An Ancient Evolutionary Origin of Genes Associated with Human Genetic Diseases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Evolutionary constraint and adaptation in the metabolic network of Drosophila

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Metabolic innovations towards the human lineage

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

A kinetic core model of the glucose-stimulated insulin secretion network of pancreatic beta cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

PAML 4: phylogenetic analysis by maximum likelihood

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Origins and impact of constraints in evolution of gene families

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Three rounds (1R/2R/3R) of genome duplications and the evolution of the glycolytic pathway in vertebrates

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Evolutionary rates, divergence dates, and the performance of mitochondrial genes in Bayesian phylogenetic analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Forgotten and novel aspects in pancreas development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Signaling and function of insulin-like peptides in insects

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Role of selection in fixation of gene duplications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

CoGenT++: an extensive and extensible data environment for computational genomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Gene factories, microfunctionalization and the evolution of gene families

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Duplicated genes evolve slower than singletons despite the initial rate increase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Type 2 diabetes mellitus: not quite exciting enough?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

The COG database: an updated version includes eukaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

COmplete GENome Tracking (COGENT): a flexible data environment for computational genomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

The phylogenetic extent of metabolic enzymes and pathways

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Genetic analysis of insulin signaling in Drosophila

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Selection in the evolution of gene duplications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

The probability of preservation of a newly arisen gene duplicate

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

The evolutionary fate and consequences of duplicate genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Mitochondrial energy metabolism is regulated via nuclear-coded subunits of cytochrome c oxidase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

The probability of duplicate gene preservation by subfunctionalization

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Variation and evolution of the citric-acid cycle: a genomic perspective.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Comparative analysis of 1196 orthologous mouse and human full-length mRNA and protein sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

A general method applicable to the search for similarities in the amino acid sequence of two proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Basic local alignment search tool

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3112093

Ablation of insulin-producing neurons in flies: growth and diabetic phenotypes

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-142

Integrating the universal metabolism into a phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-142

Evolution of nuclearly encoded mitochondrial genes in Metazoa

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-142

Systemic factors dominate mammal protein evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-142

The "inverse relationship between evolutionary rate and age of mammalian genes" is an artifact of increased genetic distance with rate of evolution and time of divergence

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-142

Restriction of DNA replication to the reductive phase of the metabolic cycle protects genome integrity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-142

Inverse relationship between evolutionary rate and age of mammalian genes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21612628

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Ordering events of biochemical evolution

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21612628

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Performance evaluation of amino acid substitution matrices

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21612628

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2148-11-142

1 reference

Dimensions Publication ID

30 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-11-142

9 September 2019

1 reference

30 July 2017

1 reference