(Q33920897)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729652%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

title

A genomic glance through the fog of plasticity and diversification in Pocillopora (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729652%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729652%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

6

Ingrid S S Knapp

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729652%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

3

Jean-François Flot

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729652%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

author name string

Erika C Johnston

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729652%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

Zac H Forsman

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729652%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

Sebastian Schmidt-Roach

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729652%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

Robert J Toonen

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729652%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

language of work or name

English

0 references

publication date

20 July 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729652%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729652%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

volume

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729652%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729652%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

page(s)

5991

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729652%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

25 March 2020

copyright license

start time

20 July 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Reevaluating species number, distribution and endemism of the coral genus Pocillopora Lamarck, 1816 using species delimitation methods and microsatellites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Recent origin and semi-permeable species boundaries in the scleractinian coral genus Stylophora from the Red Sea

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Formation of the Isthmus of Panama

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Complete mitochondrial genome sequences of Atlantic representatives of the invasive Pacific coral species Tubastraea coccinea and T. tagusensis (Scleractinia, Dendrophylliidae): Implications for species identification

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Merging scleractinian genera: the overwhelming genetic similarity between solitary Desmophyllum and colonial Lophelia

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Genetic Exchange among Bdelloid Rotifers Is More Likely Due to Horizontal Gene Transfer Than to Meiotic Sex.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Harnessing the power of RADseq for ecological and evolutionary genomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Switch between Morphospecies of Pocillopora Corals

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Pocillopora aliciae: a new species of scleractinian coral (Scleractinia, Pocilloporidae) from subtropical Eastern Australia

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Trans-Pacific RAD-Seq population genomics confirms introgressive hybridization in Eastern Pacific Pocillopora corals.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Advanced heat map and clustering analysis using heatmap3.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

BEAST 2: a software platform for Bayesian evolutionary analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Overview of the taxonomy of zooxanthellate Scleractinia

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

ezRAD: a simplified method for genomic genotyping in non-model organisms

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Mixed asexual and sexual reproduction in the Indo-Pacific reef coral Pocillopora damicornis.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

PEAR: a fast and accurate Illumina Paired-End reAd mergeR.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

jModelTest 2: more models, new heuristics and parallel computing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral, Pocillopora damicornis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Incongruence between morphotypes and genetically delimited species in the coral genus Stylophora: phenotypic plasticity, morphological convergence, morphological stasis or interspecific hybridization?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

The variant call format and VCFtools

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Haplowebs as a graphical tool for delimiting species: a revival of Doyle's "field for recombination" approach and its application to the coral genus Pocillopora in Clipperton

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Species delimitation of common reef corals in the genus Pocillopora using nucleotide sequence phylogenies, population genetics and symbiosis ecology.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Phenotypic plasticity's impacts on diversification and speciation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

The Sequence Alignment/Map format and SAMtools

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Fast and accurate short read alignment with Burrows-Wheeler transform

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Morphological plasticity in scleractinian corals

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Mitochondrial and nuclear genes suggest that stony corals are monophyletic but most families of stony corals are not (Order Scleractinia, Class Anthozoa, Phylum Cnidaria)

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Patterns of genetic structure among Hawaiian corals of the genus Pocillopora yield clusters of individuals that are compatible with morphology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

The mitochondrial genome of Pocillopora (Cnidaria: Scleractinia) contains two variable regions: the putative D-loop and a novel ORF of unknown function

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

MUSCLE: multiple sequence alignment with high accuracy and high throughput

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

With eyes wide open: a revision of species within and closely related to thePocillopora damicornisspecies complex (Scleractinia; Pocilloporidae) using morphology and genetics

28 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-06085-3

Broadcast spawning by Pocillopora species on the Great Barrier Reef

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-06085-3

Next-generation sequencing for molecular ecology: a caveat regarding pooled samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-06085-3

Morphological variation and different branch modularity across contrasting flow conditions in dominant Pocillopora reef-building corals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-06085-3

Links between climate and sea levels for the past three million years

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-06085-3

BEDTools: a flexible suite of utilities for comparing genomic features

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-06085-3

Unique mitogenomic features in the scleractinian family pocilloporidae (scleractinia: astrocoeniina).

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-06085-3

ExaBayes: massively parallel bayesian tree inference for the whole-genome era.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-06085-3

Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-06085-3

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-06085-3

Comparative genomics explains the evolutionary success of reef-forming corals

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519588

Preservation of corals in salt-saturated DMSO buffer is superior to ethanol for PCR experiments

29 October 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-06085-3

A NEW RECORD OF THE LATE PLEISTOCENE CORALPOCILLOPORA PALMATAFROM THE DRY TORTUGAS, FLORIDA REEF TRACT, USA

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-06085-3

Mesophotic coral buildups in a prodelta setting (Late Eocene, southern Pyrenees, Spain): a mixed carbonate-siliciclastic system

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-06085-3

Examination of the Montastraea annularis Species Complex (Cnidaria: Scleractinia) Using ITS and COI Sequences

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28729652

12 December 2020

inferred from PubMed ID database lookup

Blind to morphology: genetics identifies several widespread ecologically common species and few endemics among Indo-Pacific cauliflower corals (Pocillopora, Scleractinia)

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-06085-3

7 January 2021

inferred from DOI database lookup

Assessing hidden species diversity in the coral Pocillopora damicornis from Eastern Australia

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-06085-3

7 January 2021

inferred from DOI database lookup

Genetic Evidence for Regional Isolation of Pocillopora Corals from Moorea

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-06085-3

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/S41598-017-06085-3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729652%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

25 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28729652%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

PubMed publication ID

28729652

1 reference