(Q33926816)

30 July 2017

title

Epistasis between beneficial mutations and the phenotype-to-fitness Map for a ssDNA virus (English)

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30 July 2017

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1 reference

Darin R Rokyta

1

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30 July 2017

Paul Joyce

2

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30 July 2017

S Brian Caudle

3

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30 July 2017

Craig Miller

4

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30 July 2017

Craig J Beisel

5

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30 July 2017

Holly A Wichman

6

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30 July 2017

publication date

2 June 2011

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30 July 2017

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30 July 2017

volume

7

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30 July 2017

issue

6

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30 July 2017

page(s)

e1002075

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Creative Commons Attribution 4.0 International

30 July 2017

copyright license

start time

2 June 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Positive epistasis drives the acquisition of multidrug resistance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Stepwise acquisition of pyrimethamine resistance in the malaria parasite

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

The Evolutionary Enigma of Sex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Clonal interference, multiple mutations and adaptation in large asexual populations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Beneficial fitness effects are not exponential for two viruses.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

The distribution of beneficial and fixed mutation fitness effects close to an optimum

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Experimental evolution and genome sequencing reveal variation in levels of clonal interference in large populations of bacteriophage phiX174.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Clonal interference in large populations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Testing the extreme value domain of attraction for distributions of beneficial fitness effects

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Beneficial mutation selection balance and the effect of linkage on positive selection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Studies on Hybrid Sterility. II. Localization of Sterility Factors in Drosophila Pseudoobscura Hybrids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Epistasis correlates to genomic complexity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Quantifying antagonistic epistasis in a multifunctional RNA secondary structure of the Rous sarcoma virus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Darwinian evolution can follow only very few mutational paths to fitter proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Horizontal gene transfer and the evolution of microvirid coliphage genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Variable pleiotropic effects from mutations at the same locus hamper prediction of fitness from a fitness component

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

The biochemical architecture of an ancient adaptive landscape

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Missense meanderings in sequence space: a biophysical view of protein evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Perspective: Sign epistasis and genetic constraint on evolutionary trajectories

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Adaptation in sexuals vs. asexuals: clonal interference and the Fisher-Muller model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

The rate of compensatory mutation in the DNA bacteriophage phiX174

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

The coupon collector and the suppressor mutation: estimating the number of compensatory mutations by maximum likelihood.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

An empirical test of the mutational landscape model of adaptation using a single-stranded DNA virus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Evidence for Positive Epistasis in HIV-1

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

The contribution of epistasis to the architecture of fitness in an RNA virus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

The speed of adaptation in large asexual populations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Epistasis and its relationship to canalization in the RNA virus phi 6.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Dobzhansky-Muller incompatibilities in protein evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Test of synergistic interactions among deleterious mutations in bacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

The population genetics of speciation: the evolution of hybrid incompatibilities

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Protein evolution on partially correlated landscapes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Towards a general theory of adaptive walks on rugged landscapes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

Deleterious mutations, variable epistatic interactions, and the evolution of recombination.

5 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002075

REVERSIBILITY IN EVOLUTION CONSIDERED FROM THE STANDPOINT OF GENETICS

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002075

Experimental genomic evolution: extensive compensation for loss of DNA ligase activity in a virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002075

Compensated deleterious mutations in insect genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002075

The fate of competing beneficial mutations in an asexual population.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002075

The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002075

Distributions of epistasis in microbes fit predictions from a fitness landscape model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002075

Molecular Evolution Over the Mutational Landscape

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002075

Experimental evolution yields hundreds of mutations in a functional viral genome

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3107187

The population genetics of adaptation: the adaptation of DNA sequences

29 October 2018

1 reference

12 December 2020

Properties of adaptive walks on uncorrelated landscapes under strong selection and weak mutation.

1 reference

12 December 2020

The population genetics of adaptation on correlated fitness landscapes: the block model

1 reference

12 December 2020

Clonal interference is alleviated by high mutation rates in large populations

1 reference

12 December 2020

Variable epistatic effects between mutations at host recognition sites in phiX174 bacteriophage

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.1002075

Identifiers

DOI

1 reference

30 July 2017

1 reference

30 July 2017

1 reference