(Q33934016)

30 July 2017

title

Illumina-based analysis of microbial community diversity (English)

1 reference

30 July 2017

2

Howard Ochman

1 reference

30 July 2017

Patrick H Degnan

1

1 reference

30 July 2017

publication date

16 June 2011

1 reference

30 July 2017

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30 July 2017

volume

6

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30 July 2017

issue

1

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30 July 2017

page(s)

183-194

1 reference

https://scigraph.springernature.com/pub.10.1038/ismej.2011.74

30 July 2017

exact match

0 references

cites work

Microbiome profiling by illumina sequencing of combinatorial sequence-tagged PCR products

1 reference

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BIPES, a cost-effective high-throughput method for assessing microbial diversity.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246231

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246231

Significant association between sulfate-reducing bacteria and uranium-reducing microbial communities as revealed by a combined massively parallel sequencing-indicator species approach

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246231

Unlocking short read sequencing for metagenomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246231

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

28 July 2018

1 reference

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Ecology of the rare microbial biosphere of the Arctic Ocean

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246231

Bacterial community variation in human body habitats across space and time

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246231

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246231

Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246231

Characterization of airborne microbial communities at a high-elevation site and their potential to act as atmospheric ice nuclei

28 July 2018

1 reference

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Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246231

The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing

28 July 2018

1 reference

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The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

28 July 2018

1 reference

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Evolution of mammals and their gut microbes

28 July 2018

1 reference

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Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246231

A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246231

Query-dependent banding (QDB) for faster RNA similarity searches

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246231

Microbial diversity in the deep sea and the underexplored "rare biosphere"

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246231

Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246231

Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities.

28 July 2018

1 reference

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Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246231

The complete genome sequence of Escherichia coli K-12

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246231

Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3246231

Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation

28 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.74

Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.74

Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.74

Pyrosequencing analysis of the oral microflora of healthy adults

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.74

Metagenomic study of the oral microbiota by Illumina high-throughput sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.74

Mapping short DNA sequencing reads and calling variants using mapping quality scores

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.74

Short pyrosequencing reads suffice for accurate microbial community analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.74

Diversity and population structure of sewage-derived microorganisms in wastewater treatment plant influent.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.74

Compilation of small ribosomal subunit RNA sequences

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21677692

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/ISMEJ.2011.74

1 reference

Dimensions Publication ID

30 July 2017

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30 July 2017

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