(Q33995951)

30 July 2017

title

Cycloquest: identification of cyclopeptides via database search of their mass spectra against genome databases (English)

1 reference

30 July 2017

0 references

Aaron G Poth

4

0 references

Joshua S. Mylne

object named as

Joshua S Mylne

3

0 references

Michelle Colgrave

object named as

Michelle L Colgrave

5

0 references

Pieter C. Dorrestein

8

object named as

Pieter C Dorrestein

1 reference

30 July 2017

1

Hosein Mohimani

1 reference

30 July 2017

9

Pavel A Pevzner

1 reference

30 July 2017

Wei-Ting Liu

2

1 reference

30 July 2017

Dat Tran

6

1 reference

30 July 2017

Michael E Selsted

7

1 reference

30 July 2017

publication date

7 September 2011

1 reference

Journal of Proteome Research

30 July 2017

published in

1 reference

30 July 2017

volume

10

1 reference

30 July 2017

issue

10

1 reference

30 July 2017

page(s)

4505-4512

1 reference

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Multiplex de novo sequencing of peptide antibiotics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Genome mining for ribosomally synthesized natural products

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Imaging mass spectrometry of intraspecies metabolic exchange revealed the cannibalistic factors of Bacillus subtilis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

High-throughput method for on-target performic acid oxidation of MALDI-deposited samples

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Dereplication and de novo sequencing of nonribosomal peptides

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Drug discovery and natural products: end of an era or an endless frontier?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Substrate-guided design of a potent and selective kallikrein-related peptidase inhibitor for kallikrein 4.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Reawakening retrocyclins: ancestral human defensins active against HIV-1

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

A ranking-based scoring function for peptide-spectrum matches

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Spectral dictionaries: Integrating de novo peptide sequencing with database search of tandem mass spectra

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Isolation and characterization of carnocyclin a, a novel circular bacteriocin produced by Carnobacterium maltaromaticum UAL307.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Uberolysin: a novel cyclic bacteriocin produced by Streptococcus uberis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

CyBase: a database of cyclic protein sequence and structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Structure of subtilosin A, an antimicrobial peptide from Bacillus subtilis with unusual posttranslational modifications linking cysteine sulfurs to alpha-carbons of phenylalanine and threonine

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Probability-based protein identification by searching sequence databases using mass spectrometry data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

A cyclic antimicrobial peptide produced in primate leukocytes by the ligation of two truncated alpha-defensins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

High-resolution structure of a potent, cyclic proteinase inhibitor from sunflower seeds

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Error-tolerant identification of peptides in sequence databases by peptide sequence tags

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Cyclopsychotride A, a biologically active, 31-residue cyclic peptide isolated from Psychotria longipes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Elucidation of the primary and three-dimensional structure of the uterotonic polypeptide kalata B1

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Virotoxins: actin-binding cyclic peptides of Amanita virosa mushrooms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Poisonous principles of mushrooms of the genus Amanita. Four-carbon amines acting on the central nervous system and cell-destroying cyclic peptides are produced

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Chemical structure of circulin B.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Microcin 25, a novel antimicrobial peptide produced by Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Albumins and their processing machinery are hijacked for cyclic peptides in sunflower

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

A new "era" for cyclotide sequencing.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Algorithm for identification of fusion proteins via mass spectrometry.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Peptide sequence tags for fast database search in mass-spectrometry.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Cannibalism by sporulating bacteria

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Synthesis and evaluation of the sunflower derived trypsin inhibitor as a potent inhibitor of the type II transmembrane serine protease, matriptase.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

On the Effect of a Polypeptide Isolated from “Kalata-Kalata” (Oldenlandia affinis DC) on the Oestrogen Dominated Uterus

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3242011

Subtilosin A, a new antibiotic peptide produced by Bacillus subtilis 168: isolation, structural analysis, and biogenesis

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21851130

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Chemical structure of circulin A

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21851130

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Design and synthesis of redox stable analogues of sunflower trypsin inhibitors (SFTI-1) on solid support, potent inhibitors of matriptase

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21851130

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Sequencing cyclic peptides by multistage mass spectrometry

2 references

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1002/PMIC.201000697

5 May 2024

https://opencitations.net/index/api/v1/references/10.1021/PR200323A

Identifiers

DOI

10.1021/PR200323A

1 reference

30 July 2017

1 reference

30 July 2017

1 reference