(Q33997209)

30 July 2017

title

Multiple distinct stimuli increase measured nucleosome occupancy around human promoters (English)

1 reference

30 July 2017

3

Trevor K Archer

1 reference

30 July 2017

Chuong D Pham

1

1 reference

30 July 2017

Hillel I Sims

series ordinal

2

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30 July 2017

Gavin R Schnitzler

series ordinal

4

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30 July 2017

language of work or name

English

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publication date

11 August 2011

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30 July 2017

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30 July 2017

volume

6

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30 July 2017

issue

8

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30 July 2017

page(s)

e23490

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Creative Commons CC0 License

30 July 2017

copyright license

start time

11 August 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

describes a project that uses

ImageQuant

object named as

ImageQuant

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

High nucleosome occupancy is encoded at human regulatory sequences

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Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation

28 July 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

28 July 2018

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Antagonistic roles for BRM and BRG1 SWI/SNF complexes in differentiation

28 July 2018

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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

28 July 2018

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Long-term low level glucocorticoid exposure induces persistent repression in chromatin

28 July 2018

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Control of nucleosome positions by DNA sequence and remodeling machines

28 July 2018

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DNA physical properties determine nucleosome occupancy from yeast to fly.

28 July 2018

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Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation

28 July 2018

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Interaction of the glucocorticoid receptor with the chromatin landscape

28 July 2018

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Dynamic regulation of nucleosome positioning in the human genome

28 July 2018

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Stress-dependent dynamics of global chromatin remodeling in yeast: dual role for SWI/SNF in the heat shock stress response

28 July 2018

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The HSA domain of BRG1 mediates critical interactions required for glucocorticoid receptor-dependent transcriptional activation in vivo

28 July 2018

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A nucleosome-guided map of transcription factor binding sites in yeast

28 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Human SWI/SNF drives sequence-directed repositioning of nucleosomes on C-myc promoter DNA minicircles

28 July 2018

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A high-resolution atlas of nucleosome occupancy in yeast

28 July 2018

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Nucleosome positioning signals in genomic DNA

28 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Independent and complementary methods for large-scale structural analysis of mammalian chromatin

28 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Nuclear receptors and chromatin remodeling machinery

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Chromatin-dependent cooperativity between site-specific transcription factors in vivo

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin

28 July 2018

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A genomic code for nucleosome positioning

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Chromatin remodelling in mammalian differentiation: lessons from ATP-dependent remodellers

28 July 2018

1 reference

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The c-myc gene is a direct target of mammalian SWI/SNF-related complexes during differentiation-associated cell cycle arrest

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Non-genomic glucocorticoid effects to provide the basis for new drug developments

28 July 2018

1 reference

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The p270 (ARID1A/SMARCF1) subunit of mammalian SWI/SNF-related complexes is essential for normal cell cycle arrest.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Regulating SWI/SNF subunit levels via protein-protein interactions and proteasomal degradation: BAF155 and BAF170 limit expression of BAF57

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Changes in attitude, changes in latitude: nuclear receptors remodeling chromatin to regulate transcription

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Chromatin immunoprecipitation (ChIP) scanning identifies primary glucocorticoid receptor target genes.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Epigenetic regulation of 11 beta-hydroxysteroid dehydrogenase type 2 expression

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Implication of BRG1 and cdk9 in the STAT3-mediated activation of the p21waf1 gene

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

RNAPol-ChIP: a novel application of chromatin immunoprecipitation to the analysis of real-time gene transcription.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Rapid periodic binding and displacement of the glucocorticoid receptor during chromatin remodeling

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Reconstitution of glucocorticoid receptor-dependent transcription in vivo

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

The interplay between the glucocorticoid receptor and nuclear factor-kappaB or activator protein-1: molecular mechanisms for gene repression

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

BAF60a mediates critical interactions between nuclear receptors and the BRG1 chromatin-remodeling complex for transactivation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Nuclear factor 1 is required for both hormone-dependent chromatin remodeling and transcriptional activation of the mouse mammary tumor virus promoter

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Regulation of CSF1 promoter by the SWI/SNF-like BAF complex

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Large-scale chromatin decondensation and recondensation regulated by transcription from a natural promoter

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Chromatin remodelling by the glucocorticoid receptor requires the BRG1 complex

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

The position and length of the steroid-dependent hypersensitive region in the mouse mammary tumor virus long terminal repeat are invariant despite multiple nucleosome B frames

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Nucleosomal structure of active and inactive c-myc genes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Influence of hormone antagonists on chromatin remodeling and transcription factor binding to the mouse mammary tumor virus promoter in vivo

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Nucleosome-mediated disruption of transcription factor-chromatin initiation complexes at the mouse mammary tumor virus long terminal repeat in vivo

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Hormone induces binding of receptors and transcription factors to a rearranged nucleosome on the MMTV promoter in vivo

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Sequence-specific positioning of nucleosomes over the steroid-inducible MMTV promoter

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Evidence that nucleosomes on the mouse mammary tumor virus promoter adopt specific translational positions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154950

Genome-scale identification of nucleosome positions in S. cerevisiae

28 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

High-throughput mapping of the chromatin structure of human promoters.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Effects of glucocorticoids on inflammation and arthritis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Determinants of cell- and gene-specific transcriptional regulation by the glucocorticoid receptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Transcriptional Regulation of Human UGT1A1 Gene Expression: Activated Glucocorticoid Receptor Enhances constitutive Androstane Receptor/Pregnane X Receptor-Mediated UDP-Glucuronosyltransferase 1A1 Regulation with Glucocorticoid Receptor-Interacting P

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Nature of the accessible chromatin at a glucocorticoid-responsive enhancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Recruitment of the SWI-SNF chromatin remodeling complex as a mechanism of gene activation by the glucocorticoid receptor tau1 activation domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Chromatin remodeling by nuclear receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Role for BRG1 in cell cycle control and tumor suppression

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Cooperative activity of BRG1 and Z-DNA formation in chromatin remodeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Distinct mammalian SWI/SNF chromatin remodeling complexes with opposing roles in cell-cycle control

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Cyclin A repression in quiescent cells is associated with chromatin remodeling of its promoter and requires Brahma/SNF2alpha

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

DNA instructed displacement of histones H2A and H2B at an inducible promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Swapping function of two chromatin remodeling complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Selective activation of the glucocorticoid receptor by steroid antagonists in human breast cancer and osteosarcoma cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Nucleosome positioning on the MMTV LTR results from the frequency-biased occupancy of multiple frames

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

The chromatin structure of the dual c-myc promoter P1/P2 is regulated by separate elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Human SWI/SNF generates abundant, structurally altered dinucleosomes on polynucleosomal templates

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Human SWI/SNF directs sequence-specific chromatin changes on promoter polynucleosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Divergent human remodeling complexes remove nucleosomes from strong positioning sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Target-specific utilization of transcriptional regulatory surfaces by the glucocorticoid receptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

A BAF-centred view of the immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Human SWI/SNF interconverts a nucleosome between its base state and a stable remodeled state

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Impact of normalization on miRNA microarray expression profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023490

Cell fates as high-dimensional attractor states of a complex gene regulatory network

21 January 2018

1 reference

12 December 2020

Nucleosome positions predicted through comparative genomics

1 reference

12 December 2020

Accessory factors facilitate the binding of glucocorticoid receptor to the phosphoenolpyruvate carboxykinase gene promoter

1 reference

12 December 2020

Chromatin structure of the c-myc gene in HL-60 cells during alterations of transcriptional activity

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0023490

Identifiers

DOI

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30 July 2017

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30 July 2017

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