(Q33999249)

30 July 2017

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title

The replication clamp-loading machine at work in the three domains of life (English)

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30 July 2017

Chiara Indiani

1

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PubMed ID

16955075

30 July 2017

Mike O'Donnell

series ordinal

2

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30 July 2017

6 September 2006

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Nature Reviews Molecular Cell Biology

30 July 2017

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30 July 2017

7

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30 July 2017

10

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30 July 2017

751-761

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https://scigraph.springernature.com/pub.10.1038/nrm2022

30 July 2017

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31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA

31 March 2020

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31 March 2020

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A novel assembly mechanism for the DNA polymerase III holoenzyme DnaX complex: association of deltadelta' with DnaX(4) forms DnaX(3)deltadelta'.

31 March 2020

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The gamma subunit of DNA polymerase III holoenzyme of Escherichia coli is produced by ribosomal frameshifting

31 March 2020

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Translational frameshifting generates the gamma subunit of DNA polymerase III holoenzyme

31 March 2020

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Programmed ribosomal frameshifting generates the Escherichia coli DNA polymerase III gamma subunit from within the tau subunit reading frame

31 March 2020

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Characterization of the unique C terminus of the Escherichia coli tau DnaX protein. Monomeric C-tau binds alpha AND DnaB and can partially replace tau in reconstituted replication forks

31 March 2020

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tau binds and organizes Escherichia coli replication through distinct domains. Partial proteolysis of terminally tagged tau to determine candidate domains and to assign domain V as the alpha binding domain

31 March 2020

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Coupling of a replicative polymerase and helicase: a tau-DnaB interaction mediates rapid replication fork movement

31 March 2020

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Replisome assembly reveals the basis for asymmetric function in leading and lagging strand replication.

31 March 2020

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In vivo assembly of the tau-complex of the DNA polymerase III holoenzyme expressed from a five-gene artificial operon. Cleavage of the tau-complex to form a mixed gamma-tau-complex by the OmpT protease.

31 March 2020

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Crystal structure of the chi:psi sub-assembly of the Escherichia coli DNA polymerase clamp-loader complex

31 March 2020

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The chi psi subunits of DNA polymerase III holoenzyme bind to single-stranded DNA-binding protein (SSB) and facilitate replication of an SSB-coated template

31 March 2020

1 reference

Trading places on DNA--a three-point switch underlies primer handoff from primase to the replicative DNA polymerase

31 March 2020

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The opened processivity clamp slides into view

31 March 2020

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Crystal structure of the hexamerization domain of N-ethylmaleimide-sensitive fusion protein

31 March 2020

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Structure of the ATP-dependent oligomerization domain of N-ethylmaleimide sensitive factor complexed with ATP

31 March 2020

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The internal workings of a DNA polymerase clamp-loading machine

31 March 2020

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Molecular mechanism and energetics of clamp assembly in Escherichia coli. The role of ATP hydrolysis when gamma complex loads beta on DNA.

31 March 2020

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A model for Escherichia coli DNA polymerase III holoenzyme assembly at primer/template ends. DNA triggers a change in binding specificity of the gamma complex clamp loader

31 March 2020

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Mechanism of loading the Escherichia coli DNA polymerase III beta sliding clamp on DNA. Bona fide primer/templates preferentially trigger the gamma complex to hydrolyze ATP and load the clamp

31 March 2020

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Mechanism of the delta wrench in opening the beta sliding clamp

31 March 2020

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Structural analysis of the inactive state of the Escherichia coli DNA polymerase clamp-loader complex

31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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Tau protects beta in the leading-strand polymerase complex at the replication fork.

31 March 2020

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The recombination-replication interface

31 March 2020

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Assembly and disassembly of DNA polymerase holoenzyme.

31 March 2020

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Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex

31 March 2020

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On the solution structure of the T4 sliding clamp (gp45).

31 March 2020

1 reference

The kinetic mechanism of formation of the bacteriophage T4 DNA polymerase sliding clamp

31 March 2020

1 reference

Role of adenosine 5'-triphosphate hydrolysis in the assembly of the bacteriophage T4 DNA replication holoenzyme complex

31 March 2020

1 reference

Tracking sliding clamp opening and closing during bacteriophage T4 DNA polymerase holoenzyme assembly.

31 March 2020

1 reference

Fluorescence monitoring of T4 polymerase holoenzyme accessory protein interactions during loading of the sliding clamp onto the template-primer junction

31 March 2020

1 reference

Protein-protein and protein-DNA interactions at the bacteriophage T4 DNA replication fork. Characterization of a fluorescently labeled DNA polymerase sliding clamp

31 March 2020

1 reference

Dissecting the order of bacteriophage T4 DNA polymerase holoenzyme assembly

31 March 2020

1 reference

Creating a dynamic picture of the sliding clamp during T4 DNA polymerase holoenzyme assembly by using fluorescence resonance energy transfer

31 March 2020

1 reference

Examination of the role of the clamp-loader and ATP hydrolysis in the formation of the bacteriophage T4 polymerase holoenzyme

31 March 2020

1 reference

Structural analyses of gp45 sliding clamp interactions during assembly of the bacteriophage T4 DNA polymerase holoenzyme. I. Conformational changes within the gp44/62-gp45-ATP complex during clamp loading

31 March 2020

1 reference

Dissociative properties of the proteins within the bacteriophage T4 replisome.

31 March 2020

1 reference

Protein-DNA cross-linking demonstrates stepwise ATP-dependent assembly of T4 DNA polymerase and its accessory proteins on the primer-template

31 March 2020

1 reference

Building a replisome solution structure by elucidation of protein-protein interactions in the bacteriophage T4 DNA polymerase holoenzyme

31 March 2020

1 reference

Mechanism of bacteriophage T4 DNA holoenzyme assembly: the 44/62 protein acts as a molecular motor

31 March 2020

1 reference

Structural analyses of gp45 sliding clamp interactions during assembly of the bacteriophage T4 DNA polymerase holoenzyme. III. The Gp43 DNA polymerase binds to the same face of the sliding clamp as the clamp loader

31 March 2020

1 reference

Structural analyses of gp45 sliding clamp interactions during assembly of the bacteriophage T4 DNA polymerase holoenzyme. II. The Gp44/62 clamp loader interacts with a single defined face of the sliding clamp ring

31 March 2020

1 reference

Assembly of a functional replication complex without ATP hydrolysis: a direct interaction of bacteriophage T4 gp45 with T4 DNA polymerase

31 March 2020

1 reference

DNA polymerases that propagate the eukaryotic DNA replication fork

31 March 2020

1 reference

Eukaryotic DNA Polymerases

31 March 2020

1 reference

Replication factor C interacts with the C-terminal side of proliferating cell nuclear antigen

31 March 2020

1 reference

Functional sites of human PCNA which interact with p21 (Cip1/Waf1), DNA polymerase delta and replication factor C

31 March 2020

1 reference

Identification of regions within the four small subunits of human replication factor C required for complex formation and DNA replication

31 March 2020

1 reference

cDNAs encoding the large subunit of human replication factor C

31 March 2020

1 reference

ATP utilization by yeast replication factor C. I. ATP-mediated interaction with DNA and with proliferating cell nuclear antigen

31 March 2020

1 reference

Overproduction in Escherichia coli and characterization of yeast replication factor C lacking the ligase homology domain

31 March 2020

1 reference

A novel Rad24 checkpoint protein complex closely related to replication factor C.

31 March 2020

1 reference

Purification and characterization of human DNA damage checkpoint Rad complexes

31 March 2020

1 reference

Elg1 forms an alternative RFC complex important for DNA replication and genome integrity

31 March 2020

1 reference

ELG1, a yeast gene required for genome stability, forms a complex related to replication factor C

31 March 2020

1 reference

Elg1 forms an alternative PCNA-interacting RFC complex required to maintain genome stability

31 March 2020

1 reference

Biochemical characterization of DNA damage checkpoint complexes: clamp loader and clamp complexes with specificity for 5' recessed DNA

31 March 2020

1 reference

Replication protein A-mediated recruitment and activation of Rad17 complexes

31 March 2020

1 reference

Molecular mechanisms of mammalian DNA repair and the DNA damage checkpoints

31 March 2020

1 reference

The PCNA-RFC families of DNA clamps and clamp loaders

31 March 2020

1 reference

Replication protein A-directed unloading of PCNA by the Ctf18 cohesion establishment complex

31 March 2020

1 reference

Mechanism of proliferating cell nuclear antigen clamp opening by replication factor C

31 March 2020

1 reference

ATP binding to the Escherichia coli clamp loader powers opening of the ring-shaped clamp of DNA polymerase III holoenzyme

31 March 2020

1 reference

Mechanism of elongation of primed DNA by DNA polymerase delta, proliferating cell nuclear antigen, and activator 1

31 March 2020

1 reference

ATP utilization by yeast replication factor C. II. Multiple stepwise ATP binding events are required to load proliferating cell nuclear antigen onto primed DNA.

31 March 2020

1 reference

ATP utilization by yeast replication factor C. III. The ATP-binding domains of Rfc2, Rfc3, and Rfc4 are essential for DNA recognition and clamp loading

31 March 2020

1 reference

Out-of-plane motions in open sliding clamps: molecular dynamics simulations of eukaryotic and archaeal proliferating cell nuclear antigen

31 March 2020

1 reference

The structure of a ring-opened proliferating cell nuclear antigen-replication factor C complex revealed by fluorescence energy transfer

31 March 2020

1 reference

Mapping the interaction of DNA with the Escherichia coli DNA polymerase clamp loader complex

31 March 2020

1 reference

Phylogenetic structure of the prokaryotic domain: The primary kingdoms

31 March 2020

1 reference

Archaeal genomics: an overview

31 March 2020

1 reference

Archaea and the origin(s) of DNA replication proteins

31 March 2020

1 reference

Did DNA replication evolve twice independently?

31 March 2020

1 reference

Structural basis for FEN-1 substrate specificity and PCNA-mediated activation in DNA replication and repair

31 March 2020

1 reference

A Heterotrimeric PCNA in the Hyperthermophilic Archaeon Sulfolobus solfataricus

31 March 2020

1 reference

Biochemical analysis of replication factor C from the hyperthermophilic archaeon Pyrococcus furiosus

31 March 2020

1 reference

Biochemical characterization of a clamp-loader complex homologous to eukaryotic replication factor C from the hyperthermophilic archaeon Sulfolobus solfataricus

31 March 2020

1 reference

Biochemical characterisation of the clamp/clamp loader proteins from the euryarchaeon Archaeoglobus fulgidus

31 March 2020

1 reference

A unique organization of the protein subunits of the DNA polymerase clamp loader in the archaeon Methanobacterium thermoautotrophicum deltaH

31 March 2020

1 reference

Physical interaction between proliferating cell nuclear antigen and replication factor C from Pyrococcus furiosus

31 March 2020

1 reference

Atomic structure of the clamp loader small subunit from Pyrococcus furiosus

31 March 2020

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Communication between subunits within an archaeal clamp-loader complex

31 March 2020

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Three-dimensional electron microscopy of the clamp loader small subunit from Pyrococcus furiosus

31 March 2020

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Nucleotide-induced conformational changes in an isolated Escherichia coli DNA polymerase III clamp loader subunit

31 March 2020

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Distinct roles for ATP binding and hydrolysis at individual subunits of an archaeal clamp loader

31 March 2020

1 reference

The clamp-loading complex for processive DNA replication

31 March 2020

1 reference

Structural and biochemical analysis of sliding clamp/ligand interactions suggest a competition between replicative and translesion DNA polymerases

31 March 2020

1 reference

A sliding-clamp toolbelt binds high- and low-fidelity DNA polymerases simultaneously.

31 March 2020

1 reference

Motors and switches: AAA+ machines within the replisome.

31 March 2020

1 reference

Evolutionary relationships and structural mechanisms of AAA+ proteins

31 March 2020

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Evolutionary clues to eukaryotic DNA clamp-loading mechanisms: analysis of the functional constraints imposed on replication factor C AAA+ ATPases

31 March 2020

1 reference

Crystal structure of the delta' subunit of the clamp-loader complex of E. coli DNA polymerase III

31 March 2020

1 reference

Confirmation of the arginine-finger hypothesis for the GAP-stimulated GTP-hydrolysis reaction of Ras

31 March 2020

1 reference

31 March 2020

Identifiers

DOI

10.1038/NRM2022

1 reference

PubMed ID

16955075

Dimensions Publication ID

30 July 2017

0 references

1 reference

PubMed ID

16955075