(Q34009602)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21887323%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

title

Divalent metal ion differentially regulates the sequential nicking reactions of the GIY-YIG homing endonuclease I-BmoI (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21887323%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

author

Benjamin P Kleinstiver

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21887323%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

author name string

Wesley Bérubé-Janzen

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21887323%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

Andrew D Fernandes

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21887323%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

David R Edgell

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21887323%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

language of work or name

English

0 references

publication date

22 August 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21887323%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21887323%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

volume

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21887323%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

issue

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21887323%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

page(s)

e23804

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21887323%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

12 February 2020

copyright license

start time

22 August 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

ImageQuant

object named as

ImageQuant

2 references

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3161791/fullTextXML

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Hpy188I-DNA pre- and post-cleavage complexes--snapshots of the GIY-YIG nuclease mediated catalysis

5 July 2018

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Natural and engineered nicking endonucleases--from cleavage mechanism to engineering of strand-specificity

5 July 2018

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Folding, DNA Recognition, and Function of GIY-YIG Endonucleases: Crystal Structures of R.Eco29kI

5 July 2018

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Structure of bacteriophage T4 endonuclease II mutant E118A, a tetrameric GIY-YIG enzyme

5 July 2018

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A unified genetic, computational and experimental framework identifies functionally relevant residues of the homing endonuclease I-BmoI.

5 July 2018

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Type II restriction endonuclease R.Hpy188I belongs to the GIY-YIG nuclease superfamily, but exhibits an unusual active site

5 July 2018

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Role of the interdomain linker in distance determination for remote cleavage by homing endonuclease I-TevI.

5 July 2018

1 reference

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Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161791

The restriction fold turns to the dark side: a bacterial homing endonuclease with a PD-(D/E)-XK motif

5 July 2018

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Structure of the C-terminal half of UvrC reveals an RNase H endonuclease domain with an Argonaute-like catalytic triad

5 July 2018

1 reference

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Homing endonuclease I-CreI derivatives with novel DNA target specificities

5 July 2018

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Computational redesign of endonuclease DNA binding and cleavage specificity

5 July 2018

1 reference

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Phylogenomic analysis of the GIY-YIG nuclease superfamily

5 July 2018

1 reference

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Making and breaking nucleic acids: two-Mg2+-ion catalysis and substrate specificity

5 July 2018

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Homing endonuclease structure and function

5 July 2018

1 reference

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Structural insights into the first incision reaction during nucleotide excision repair

5 July 2018

1 reference

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The natural history of group I introns

5 July 2018

1 reference

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Metal-dependent DNA cleavage mechanism of the I-CreI LAGLIDADG homing endonuclease

5 July 2018

1 reference

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Reverse transcriptase and endonuclease activities encoded by Penelope-like retroelements

5 July 2018

1 reference

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DNA binding and cleavage by the HNH homing endonuclease I-HmuI

5 July 2018

1 reference

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Catalytic mechanisms of restriction and homing endonucleases

5 July 2018

1 reference

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Type II restriction endonucleases

5 July 2018

1 reference

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Catalytic domain structure and hypothesis for function of GIY-YIG intron endonuclease I-TevI

5 July 2018

1 reference

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Structural and catalytic roles for divalent magnesium in nucleic acid biochemistry

5 July 2018

1 reference

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Zinc finger as distance determinant in the flexible linker of intron endonuclease I-TevI.

5 July 2018

1 reference

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Mechanism and cleavage specificity of the H-N-H endonuclease colicin E9.

5 July 2018

1 reference

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5 July 2018

1 reference

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The homing endonuclease I-CreI uses three metals, one of which is shared between the two active sites

5 July 2018

1 reference

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Invasion of a multitude of genetic niches by mobile endonuclease genes

5 July 2018

1 reference

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Catalytic sites for 3' and 5' incision of Escherichia coli nucleotide excision repair are both located in UvrC

5 July 2018

1 reference

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A novel endonuclease mechanism directly visualized for I-PpoI

5 July 2018

1 reference

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Configuration of the catalytic GIY-YIG domain of intron endonuclease I-TevI: coincidence of computational and molecular findings

5 July 2018

1 reference

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DNA recognition and cleavage by the LAGLIDADG homing endonuclease I-CreI

5 July 2018

1 reference

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Structure of FokI has implications for DNA cleavage

5 July 2018

1 reference

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DNA bending by small, mobile multivalent cations

5 July 2018

1 reference

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Double strand break-induced recombination in Chlamydomonas reinhardtii chloroplasts

5 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161791

5 July 2018

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023804

Multiple roles for divalent metal ions in DNA transposition: distinct stages of Tn10 transposition have different Mg2+ requirements

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161791

Intron-encoded endonuclease I-TevI binds as a monomer to effect sequential cleavage via conformational changes in the td homing site.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161791

Raman spectroscopy of DNA-metal complexes. I. Interactions and conformational effects of the divalent cations: Mg, Ca, Sr, Ba, Mn, Co, Ni, Cu, Pd, and Cd

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161791

Horizontal transfer of ATPase genes--the tree of life becomes a net of life

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161791

Intron mobility in the T-even phages: high frequency inheritance of group I introns promoted by intron open reading frames.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161791

A site-specific endonuclease and co-conversion of flanking exons associated with the mobile td intron of phage T4.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161791

Mobile introns: definition of terms and recommended nomenclature

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161791

Intron mobility in phage T4 is dependent upon a distinctive class of endonucleases and independent of DNA sequences encoding the intron core: mechanistic and evolutionary implications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161791

I-TevI, the endonuclease encoded by the mobile td intron, recognizes binding and cleavage domains on its DNA target

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161791

Distance determination by GIY-YIG intron endonucleases: discrimination between repression and cleavage functions

5 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023804

Coincidence of cleavage sites of intron endonuclease I-TevI and critical sequences of the host thymidylate synthase gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023804

Tetrameric restriction enzymes: expansion to the GIY-YIG nuclease family

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023804

Oligomeric structure diversity within the GIY-YIG nuclease family

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023804

EcoRV restriction endonuclease: communication between catalytic metal ions and DNA recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023804

Strand-specific contacts and divalent metal ion regulate double-strand break formation by the GIY-YIG homing endonuclease I-BmoI

21 January 2018

1 reference

12 December 2020

Domain organization and functional analysis of type IIS restriction endonuclease Eco31I

1 reference

12 December 2020

FokI requires two specific DNA sites for cleavage

1 reference

12 December 2020

Mechanisms of metal ion action in Tn10 transposition

1 reference

12 December 2020

Importance of a Single Base Pair for Discrimination between Intron-Containing and Intronless Alleles by Endonuclease I-BmoI

1 reference

12 December 2020

Physiological concentration of magnesium ions induces a strong macroscopic curvature in GGGCCC-containing DNA

1 reference

12 December 2020

Selection of a remote cleavage site by I-tevI, the td intron-encoded endonuclease

1 reference

12 December 2020

Two-domain structure of the td intron-encoded endonuclease I-TevI correlates with the two-domain configuration of the homing site

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0023804

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21887323%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21887323%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

PubMed publication ID

21887323

1 reference