(Q34031865)

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The metagenome of the marine anammox bacterium 'Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium

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scholarly article

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Europe PubMed Central

30 July 2017

The metagenome of the marine anammox bacterium 'Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium (English)

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Europe PubMed Central

30 July 2017

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Daan Speth

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Jolein Gloerich

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Jolein Gloerich

11

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Phyllis Lam

17

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object named as

Dagmar Woebken

2

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object named as

Guus Roeselers

8

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Jack van de Vossenberg

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Jack van de Vossenberg

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object named as

Bas E Dutilh

5

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Susannah G. Tringe

object named as

Susannah Green Tringe

19

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object named as

Mike S M Jetten

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30 July 2017

Marcel M M Kuypers

24

object named as

Marcel M M Kuypers

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Europe PubMed Central

30 July 2017

author name string

Wouter J Maalcke

3

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Europe PubMed Central

30 July 2017

Hans J C T Wessels

4

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30 July 2017

Boran Kartal

6

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Europe PubMed Central

30 July 2017

Eva M Janssen-Megens

7

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Europe PubMed Central

30 July 2017

Jia Yan

9

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Europe PubMed Central

30 July 2017

Wim Geerts

12

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Europe PubMed Central

30 July 2017

Erwin van der Biezen

13

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Europe PubMed Central

30 July 2017

Wendy Pluk

14

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Europe PubMed Central

30 July 2017

Kees-Jan Francoijs

15

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Europe PubMed Central

30 July 2017

Lina Russ

16

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Europe PubMed Central

30 July 2017

Stefanie A Malfatti

18

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Europe PubMed Central

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Suzanne C M Haaijer

20

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Europe PubMed Central

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Huub J M Op den Camp

21

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Europe PubMed Central

30 July 2017

Henk G Stunnenberg

22

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Rudi Amann

23

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30 July 2017

publication date

9 May 2012

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Europe PubMed Central

30 July 2017

Environmental Microbiology

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Europe PubMed Central

30 July 2017

15

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Europe PubMed Central

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5

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30 July 2017

1275-1289

1 reference

Europe PubMed Central

30 July 2017

Nitrite oxidation in the Namibian oxygen minimum zone

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

The metagenomic basis of anammox metabolism in Candidatus 'Brocadia fulgida'.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Molecular mechanism of anaerobic ammonium oxidation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Niche segregation of ammonia-oxidizing archaea and anammox bacteria in the Arabian Sea oxygen minimum zone

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Intensive nitrogen loss over the Omani Shelf due to anammox coupled with dissimilatory nitrite reduction to ammonium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Microbial nitrogen cycling processes in oxygen minimum zones.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Proteins and protein complexes involved in the biochemical reactions of anaerobic ammonium-oxidizing bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Microbial metatranscriptomics in a permanent marine oxygen minimum zone.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Induced cooperation between marine nitrifiers and anaerobic ammonium-oxidizing bacteria by incremental exposure to oxygen.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

The evolution and future of Earth's nitrogen cycle

1 reference

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5 July 2018

Effect of nitric oxide on anammox bacteria.

1 reference

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5 July 2018

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Intracellular localization of membrane-bound ATPases in the compartmentalized anammox bacterium 'Candidatus Kuenenia stuttgartiensis'.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

A predicted physicochemically distinct sub-proteome associated with the intracellular organelle of the anammox bacterium Kuenenia stuttgartiensis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Engineering. Sewage treatment with anammox

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Structure and mechanism of a pentameric formate channel

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Revising the nitrogen cycle in the Peruvian oxygen minimum zone

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Biochemistry and molecular biology of anammox bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Expanding oxygen-minimum zones in the tropical oceans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Another multiheme protein, hydroxylamine oxidoreductase, abundantly produced in an anammox bacterium besides the hydrazine-oxidizing enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

The RAST Server: rapid annotations using subsystems technology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Function, Structure, and Evolution of the RubisCO-Like Proteins and Their RubisCO Homologs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Nitrifier genomics and evolution of the nitrogen cycle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Enrichment of anammox bacteria from marine environment for the construction of a bioremediation reactor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Anaerobic ammonium-oxidizing bacteria in marine environments: widespread occurrence but low diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Anammox bacteria disguised as denitrifiers: nitrate reduction to dinitrogen gas via nitrite and ammonium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

MEGAN analysis of metagenomic data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Isolation of a multiheme protein with features of a hydrazine-oxidizing enzyme from an anaerobic ammonium-oxidizing enrichment culture

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Molecular evidence for the broad distribution of anaerobic ammonium-oxidizing bacteria in freshwater and marine sediments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Deciphering the evolution and metabolism of an anammox bacterium from a community genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Biomarkers for in situ detection of anaerobic ammonium-oxidizing (anammox) bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

ProbCons: Probabilistic consistency-based multiple sequence alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Life with carbon monoxide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Dissimilatory Fe(III) and Mn(IV) reduction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Mauve: multiple alignment of conserved genomic sequence with rearrangements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Improved prediction of signal peptides: SignalP 3.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

ARB: a software environment for sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Anaerobic ammonium oxidation by anammox bacteria in the Black Sea.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

1 reference

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5 July 2018

Dissimilatory Fe(III) and Mn(IV) reduction by Shewanella putrefaciens requires ferE, a homolog of the pulE (gspE) type II protein secretion gene

1 reference

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5 July 2018

Nitrate and nitrite transport in bacteria

1 reference

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5 July 2018

MtrC, an outer membrane decahaem c cytochrome required for metal reduction in Shewanella putrefaciens MR-1.

1 reference

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5 July 2018

Artemis: sequence visualization and annotation

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5 July 2018

Involvement of a novel hydroxylamine oxidoreductase in anaerobic ammonium oxidation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3655542

5 July 2018

The RDP (Ribosomal Database Project) continues

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5 July 2018

Improved microbial gene identification with GLIMMER

1 reference

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5 July 2018

Missing lithotroph identified as new planctomycete

1 reference

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5 July 2018

Phylogenetic characterization of novel transport protein families revealed by genome analyses

2 references

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5 July 2018

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2012.02774.X

21 January 2018

Microbial gene identification using interpolated Markov models

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5 July 2018

Carbonic anhydrase in Acetobacterium woodii and other acetogenic bacteria

1 reference

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5 July 2018

Crystal structure of formate dehydrogenase H: catalysis involving Mo, molybdopterin, selenocysteine, and an Fe4S4 cluster

1 reference

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5 July 2018

DNA recovery from soils of diverse composition.

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5 July 2018

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

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5 July 2018

Two kinds of lithotrophs missing in nature

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5 July 2018

The role of the hybrid cluster protein in oxidative stress defense.

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21 January 2018

Characterization of the microbial community in an anaerobic ammonium-oxidizing biofilm cultured on a nonwoven biomass carrier.

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21 January 2018

Evolution of an octahaem cytochrome c protein family that is key to aerobic and anaerobic ammonia oxidation by bacteria.

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21 January 2018

NarK is a nitrite-extrusion system involved in anaerobic nitrate respiration by Escherichia coli.

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21 January 2018

Enrichment and characterization of marine anammox bacteria associated with global nitrogen gas production

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21 January 2018

Liquid chromatography-mass spectrometry-based proteomics of Nitrosomonas

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12 December 2020

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10.1111/J.1462-2920.2012.02774.X

1 reference

Europe PubMed Central

30 July 2017

1 reference

Europe PubMed Central

30 July 2017

1 reference

Europe PubMed Central

30 July 2017

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