(Q34033527)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21954150%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

title

Timescale analysis of rule-based biochemical reaction networks (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21954150%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1

David J Klinke

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21954150%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

2

Stacey D Finley

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21954150%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

publication date

26 September 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21954150%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

published in

Biotechnology Progress

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21954150%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

volume

28

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21954150%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21954150%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

page(s)

33-44

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21954150%20AND%20SRC:MED&resulttype=core&format=json

Biomolecularmodeling and simulation: a field coming of age.

13 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

A multiscale systems perspective on cancer, immunotherapy, and Interleukin-12

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Classic and contemporary approaches to modeling biochemical reactions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

SnapShot: key numbers in biology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Inferring relevant control mechanisms for interleukin-12 signaling in naïve CD4+ T cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Signal transduction networks in cancer: quantitative parameters influence network topology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Conformational spread as a mechanism for cooperativity in the bacterial flagellar switch

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

An empirical Bayesian approach for model-based inference of cellular signaling networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Computational framework for predictive biodegradation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Rule-based modeling of biochemical systems with BioNetGen

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Internal coarse-graining of molecular systems

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Kinetic Monte Carlo method for rule-based modeling of biochemical networks.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Top-down analysis of temporal hierarchy in biochemical reaction networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

The signaling petri net-based simulator: a non-parametric strategy for characterizing the dynamics of cell-specific signaling networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Reduced modeling of signal transduction - a modular approach

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Key role of local regulation in chemosensing revealed by a new molecular interaction-based modeling method

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Causal protein-signaling networks derived from multiparameter single-cell data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Reconstruction of cellular signalling networks and analysis of their properties

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Automatic generation of cellular reaction networks with Moleculizer 1.0.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Models of cell signaling pathways

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

The complexity of complexes in signal transduction.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Assembly of Cell Regulatory Systems Through Protein Interaction Domains

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Bioengineering models of cell signaling

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Differential associations between the cytoplasmic regions of the interleukin-12 receptor subunits beta1 and beta2 and JAK kinases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Analysis of intracellular receptor/ligand sorting. Calculation of mean surface and bulk diffusion times within a sphere

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

IL-12 receptor. I. Characterization of the receptor on phytohemagglutinin-activated human lymphoblasts

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381993

Signaling networks and mathematics.

28 July 2018

1 reference

Ligand-dependent responses of the ErbB signaling network: experimental and modeling analyses

21 January 2018

1 reference

Model reduction in the computational modeling of reaction systems.

21 January 2018

1 reference

Exploring the diversity of complex metabolic networks.

21 January 2018

1 reference

BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains

21 January 2018

1 reference

A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity

21 January 2018

1 reference

Domain-oriented reduction of rule-based network models.

21 January 2018

1 reference

Qualitative networks: a symbolic approach to analyze biological signaling networks

21 January 2018

1 reference

Simplifying chemical kinetics: Intrinsic low-dimensional manifolds in composition space

21 January 2018

1 reference

Control of metabolic pathways by time-scale separation.

21 January 2018

1 reference

Insulin receptor binding kinetics: modeling and simulation studies.

21 January 2018

1 reference

A mathematical model of metabolic insulin signaling pathways

21 January 2018

1 reference

The ratio of P40 monomer to dimer is an important determinant of IL-12 bioactivity

21 January 2018

1 reference

Quantification of Short Term Signaling by the Epidermal Growth Factor Receptor

21 January 2018

1 reference

N-domain-dependent nonphosphorylated STAT4 dimers required for cytokine-driven activation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21954150

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/BTPR.704

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21954150%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21954150%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

PubMed publication ID

21954150

1 reference