(Q34851465)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18851068%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

title

Kinetic Monte Carlo method for rule-based modeling of biochemical networks (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18851068%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18851068%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

William S Hlavacek

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18851068%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

author name string

Jin Yang

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18851068%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Michael I Monine

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18851068%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

language of work or name

English

0 references

publication date

10 September 2008

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18851068%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18851068%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

volume

78

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18851068%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

issue

3 Pt 1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18851068%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

page(s)

031910

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18851068%20AND%20SRC:MED&resulttype=core&format=json

Rule-based modeling of biochemical systems with BioNetGen

15 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Domain-oriented reduction of rule-based network models.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

A constant-time kinetic Monte Carlo algorithm for simulation of large biochemical reaction networks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Trivalent ligands with rigid DNA spacers reveal structural requirements for IgE receptor signaling in RBL mast cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Algorithms and software for stochastic simulation of biochemical reacting systems

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Reduced modeling of signal transduction - a modular approach

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Trivalent antigens for degranulation of mast cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

A synthetic trivalent hapten that aggregates anti-2,4-DNP IgG into bicyclic trimers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Structure-based kinetic models of modular signaling protein function: focus on Shp2.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Stochastic simulation of chemical kinetics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Rules for modeling signal-transduction systems

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Cell-signalling dynamics in time and space

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Trading the micro-world of combinatorial complexity for the macro-world of protein interaction domains.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Signaling through receptors and scaffolds: independent interactions reduce combinatorial complexity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Automatic generation of cellular reaction networks with Moleculizer 1.0.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Mathematical and computational models of immune-receptor signalling

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

The complexity of complexes in signal transduction.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Assembly of Cell Regulatory Systems Through Protein Interaction Domains

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Genomics. Molecular prodigality

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Modeling the early signaling events mediated by FcepsilonRI.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Molecular versatility of antibodies

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

STOCHSIM: modelling of stochastic biomolecular processes.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Modelling cellular behaviour

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Equilibrium theory for the clustering of bivalent cell surface receptors by trivalent ligands. Application to histamine release from basophils

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Surface IgE on human basophils during histamine release

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Transmembrane signaling: the joy of aggregation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

Dimeric immunoglobulin E serves as a unit signal for mast cell degranulation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

A general method for numerically simulating the stochastic time evolution of coupled chemical reactions

8 July 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.78.031910

Faster Monte Carlo simulations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.78.031910

Predicting temporal fluctuations in an intracellular signalling pathway.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.78.031910

Simulation study of the contribution of oligomer/oligomer binding to capsid assembly kinetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.78.031910

Exploring the parameter space of complex self-assembly through virus capsid models

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.78.031910

Exact stochastic simulation of coupled chemical reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.78.031910

Investigation of early events in Fc epsilon RI-mediated signaling using a detailed mathematical model

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652652

A Parallelised High Performance Monte Carlo Simulation Approach for Complex Polymerisation Kinetics

26 October 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.78.031910

Entropic phase separation in polymer-microemulsion networks

21 January 2018

1 reference

12 December 2020

Defect-induced phase separation in dipolar fluids

1 reference

12 December 2020

A quantitative approach for studying IgE-FcepsilonRI aggregation

1 reference

12 December 2020

Larger oligomers of IgE are more effective than dimers in stimulating rat basophilic leukemia cells

1 reference

12 December 2020

10.1103/PHYSREVE.78.031910

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18851068%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

0 references

1 reference

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18851068%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

1 reference