(Q34039084)

30 July 2017

title

OnTheFly: a database of Drosophila melanogaster transcription factors and their binding sites (English)

1 reference

30 July 2017

main subject

Drosophila melanogaster

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database

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author name string

Shula Shazman

1

1 reference

30 July 2017

Hunjoong Lee

2

1 reference

30 July 2017

Yakov Socol

3

1 reference

30 July 2017

Richard S Mann

4

1 reference

30 July 2017

Barry Honig

5

1 reference

30 July 2017

language of work or name

English

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publication date

22 November 2013

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30 July 2017

published in

Nucleic Acids Research

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30 July 2017

volume

42

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30 July 2017

issue

Database issue

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30 July 2017

page(s)

D167-71

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Creative Commons Attribution 3.0 Unported

30 July 2017

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Covariation between homeodomain transcription factors and the shape of their DNA binding sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965123

FlyBase: improvements to the bibliography

5 July 2018

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Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965123

Methods for Analysis of Transcription Factor DNA-Binding Specificity In Vitro

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965123

FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965123

ModBase, a database of annotated comparative protein structure models, and associated resources

5 July 2018

1 reference

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UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions

5 July 2018

1 reference

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REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila

5 July 2018

1 reference

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PUDGE: a flexible, interactive server for protein structure prediction

5 July 2018

1 reference

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Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo

5 July 2018

1 reference

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Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities

5 July 2018

1 reference

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JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

5 July 2018

1 reference

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FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database

5 July 2018

1 reference

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The role of DNA shape in protein-DNA recognition

5 July 2018

1 reference

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Structural relationships among proteins with different global topologies and their implications for function annotation strategies

5 July 2018

1 reference

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Local DNA topography correlates with functional noncoding regions of the human genome

5 July 2018

1 reference

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Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors

5 July 2018

1 reference

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InterPro: the integrative protein signature database

5 July 2018

1 reference

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Protein structure modeling with MODELLER

5 July 2018

1 reference

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DBD--taxonomically broad transcription factor predictions: new content and functionality

5 July 2018

1 reference

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Functional Specificity of a Hox Protein Mediated by the Recognition of Minor Groove Structure

5 July 2018

1 reference

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ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins

5 July 2018

1 reference

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FlyTF: a systematic review of site-specific transcription factors in the fruit fly Drosophila melanogaster

5 July 2018

1 reference

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TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965123

The HHpred interactive server for protein homology detection and structure prediction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965123

Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965123

The Berkeley Drosophila Genome Project gene disruption project: Single P-element insertions mutating 25% of vital Drosophila genes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965123

Recognition of errors in three-dimensional structures of proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965123

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965123

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965123

DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965123

A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965123

29 October 2018

Identifiers

DOI

10.1093/NAR/GKT1165

1 reference

journals/nar/ShazmanLSMH14

30 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

30 July 2017

1 reference