(Q34040787)

30 July 2017

title

New resources for functional analysis of omics data for the genus Aspergillus (English)

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30 July 2017

6

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30 July 2017

Vera Meyer

4

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Jonathan Crabtree

series ordinal

2

object named as

Jonathan Crabtree

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30 July 2017

Benjamin M Nitsche

1

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30 July 2017

Gustavo C Cerqueira

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3

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30 July 2017

Arthur F J Ram

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5

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30 July 2017

language of work or name

English

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publication date

5 October 2011

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30 July 2017

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30 July 2017

volume

12

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30 July 2017

page(s)

486

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describes a project that uses

30 July 2017

Cytoscape

object named as

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Gene expression profiling in brain of mice exposed to the marine neurotoxin ciguatoxin reveals an acute anti-inflammatory, neuroprotective response

5 July 2018

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Transcriptomic insights into the physiology of Aspergillus niger approaching a specific growth rate of zero

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

Independent filtering increases detection power for high-throughput experiments

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

Uncovering transcriptional regulation of glycerol metabolism in Aspergilli through genome-wide gene expression data analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species

5 July 2018

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G-SESAME: web tools for GO-term-based gene similarity analysis and knowledge discovery

5 July 2018

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Transcriptomic comparison of Aspergillus niger growing on two different sugars reveals coordinated regulation of the secretory pathway

5 July 2018

1 reference

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The 2008 update of the Aspergillus nidulans genome annotation: a community effort

5 July 2018

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Analysis of the pumpkin phloem proteome provides insights into angiosperm sieve tube function.

5 July 2018

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BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams

5 July 2018

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Comparative genomics of the neglected human malaria parasite Plasmodium vivax

5 July 2018

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Sub-telomere directed gene expression during initiation of invasive aspergillosis

5 July 2018

1 reference

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Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus

5 July 2018

1 reference

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Sybil: methods and software for multiple genome comparison and visualization

5 July 2018

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Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa

5 July 2018

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Draft genome of the filarial nematode parasite Brugia malayi

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

The first filamentous fungal genome sequences: Aspergillus leads the way for essential everyday resources or dusty museum specimens?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

Comparative genomics of emerging human ehrlichiosis agents

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

Biological profiling of gene groups utilizing Gene Ontology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

Comparative genomics of trypanosomatid parasitic protozoa

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

Genome Sequence of Theileria parva, a Bovine Pathogen That Transforms Lymphocytes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

CADRE: the Central Aspergillus Data REpository

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

Summaries of Affymetrix GeneChip probe level data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

Gene ontology: tool for the unification of biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3217955

5 July 2018

Identifiers

DOI

10.1186/1471-2164-12-486

1 reference

30 July 2017

1 reference

30 July 2017

1 reference