(Q34046487)

30 July 2017

title

A conformation ensemble approach to protein residue-residue contact (English)

1 reference

30 July 2017

1

Jesse Eickholt

1 reference

30 July 2017

Zheng Wang

2

1 reference

30 July 2017

Jianlin Cheng

series ordinal

3

1 reference

30 July 2017

publication date

12 October 2011

1 reference

30 July 2017

published in

BMC Structural Biology

1 reference

30 July 2017

volume

11

1 reference

30 July 2017

page(s)

38

1 reference

https://scigraph.springernature.com/pub.10.1186/1472-6807-11-38

30 July 2017

exact match

0 references

cites work

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Evaluation of residue-residue contact predictions in CASP9

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3200154

Hidden conformations in protein structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3200154

Predicted residue-residue contacts can help the scoring of 3D models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3200154

Assessment of CASP8 structure predictions for template free targets

5 July 2018

1 reference

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Evaluation of CASP8 model quality predictions.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3200154

Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8.

5 July 2018

1 reference

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5 July 2018

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Target domain definition and classification in CASP8

5 July 2018

1 reference

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5 July 2018

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Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts

5 July 2018

1 reference

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Predicting residue-residue contact maps by a two-layer, integrated neural-network method

5 July 2018

1 reference

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5 July 2018

1 reference

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Using inferred residue contacts to distinguish between correct and incorrect protein models

5 July 2018

1 reference

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5 July 2018

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5 July 2018

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Assessment of intramolecular contact predictions for CASP7.

5 July 2018

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Improved residue contact prediction using support vector machines and a large feature set.

5 July 2018

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Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives

5 July 2018

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A two-stage approach for improved prediction of residue contact maps.

5 July 2018

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Physically realistic homology models built with ROSETTA can be more accurate than their templates

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3200154

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5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3200154

Toward high-resolution de novo structure prediction for small proteins.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3200154

Scoring function for automated assessment of protein structure template quality

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3200154

Application of sparse NMR restraints to large-scale protein structure prediction.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3200154

Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3200154

LGA: A method for finding 3D similarities in protein structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3200154

Prediction of contact maps by GIOHMMs and recurrent neural networks using lateral propagation from all four cardinal corners.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3200154

Processing and evaluation of predictions in CASP4

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3200154

Processing and analysis of CASP3 protein structure predictions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3200154

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3200154

MONSSTER: a method for folding globular proteins with a small number of distance restraints

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1472-6807-11-38

Influence of conservation on calculations of amino acid covariance in multiple sequence alignments

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1472-6807-11-38

Prediction of distant residue contacts with the use of evolutionary information.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1472-6807-11-38

Improving contact predictions by the combination of correlated mutations and other sources of sequence information

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21989082

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1472-6807-11-38

1 reference

Dimensions Publication ID

30 July 2017

0 references

1 reference

30 July 2017

1 reference