(Q34050854)

30 July 2017

A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities (English)

1 reference

30 July 2017

Martin Reczko

4

0 references

Panayiota Poirazi

object named as

Panayiota Poirazi

series ordinal

2

0 references

author name string

Eleftheria Tzamali

series ordinal

1

1 reference

PubMed ID

22008379

30 July 2017

Ioannis G Tollis

series ordinal

3

1 reference

30 July 2017

18 October 2011

1 reference

30 July 2017

1 reference

30 July 2017

5

1 reference

30 July 2017

167

1 reference

https://scigraph.springernature.com/pub.10.1186/1752-0509-5-167

30 July 2017

0 references

cites work

Social interaction in synthetic and natural microbial communities

1 reference

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Metabolic trade-offs and the maintenance of the fittest and the flattest

5 July 2018

1 reference

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The sociobiology of molecular systems.

5 July 2018

1 reference

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OptORF: Optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Emergence of spatial structure in cell groups and the evolution of cooperation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Abundant indispensable redundancies in cellular metabolic networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Systems metabolic engineering: genome-scale models and beyond

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Evolutionary plasticity and innovations in complex metabolic reaction networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Applications of genome-scale metabolic reconstructions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Snowdrift game dynamics and facultative cheating in yeast

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Defined spatial structure stabilizes a synthetic multispecies bacterial community

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Resource supply and the evolution of public-goods cooperation in bacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Interspecies interactions within oral microbial communities

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

The degree of redundancy in metabolic genes is linked to mode of metabolism

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Metabolite essentiality elucidates robustness of Escherichia coli metabolism

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Intracellular crowding defines the mode and sequence of substrate uptake by Escherichia coli and constrains its metabolic activity.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Metabolic modeling of a mutualistic microbial community.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Synthetic cooperation in engineered yeast populations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Toward whole cell modeling and simulation: comprehensive functional genomics through the constraint-based approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Five rules for the evolution of cooperation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Social evolution theory for microorganisms.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

The activity reaction core and plasticity of metabolic networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Synergy and discounting of cooperation in social dilemmas

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Game-theoretical approaches to studying the evolution of biochemical systems

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Genome-scale models of microbial cells: evaluating the consequences of constraints

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Evolution of cross-feeding in microbial populations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

The evolution of reproductive restraint through social communication

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Integrating high-throughput and computational data elucidates bacterial networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

The architecture of complex weighted networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Global organization of metabolic fluxes in the bacterium Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Evolutionary dynamics of biological games

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Advances in flux balance analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Assortative Mixing in Networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Transcriptional regulation in constraints-based metabolic models of Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Long-Term Experimental Evolution in Escherichia coli. VIII. Dynamics of a Balanced Polymorphism

5 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

5 July 2018

https://api.crossref.org/works/10.1186%2F1752-0509-5-167

Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Microbial evolution in a simple unstructured environment: genetic differentiation in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Coexistence of S. cerevisiae and E. coli in chemostat under substrate competition and product inhibition.

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-167

Coexistence in the chemostat as a result of metabolic by-products.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-167

Flux balance analysis of biological systems: applications and challenges.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-167

The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-167

Growth of Escherichia coli MG1655 on LB medium: determining metabolic strategy with transcriptional microarrays.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-167

Bacterial gene regulation in diauxic and non-diauxic growth.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-5-167

Emergent cooperation in microbial metabolism

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Optimality criteria for the prediction of metabolic fluxes in yeast mutants.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Analysis of weighted networks.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212978

Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22008379

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The emergence and maintenance of diversity: insights from experimental bacterial populations

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22008379

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1752-0509-5-167

1 reference

journals/bmcsb/TzamaliPTR11

30 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

30 July 2017

1 reference

PubMed ID

22008379