(Q34052344)

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Comparative void-volume analysis of psychrophilic and mesophilic enzymes: Structural bioinformatics of psychrophilic enzymes reveals sources of core flexibility

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scholarly article

1 reference

Europe PubMed Central

30 July 2017

Comparative void-volume analysis of psychrophilic and mesophilic enzymes: Structural bioinformatics of psychrophilic enzymes reveals sources of core flexibility (English)

1 reference

Europe PubMed Central

30 July 2017

1 reference

based on heuristic

inferred from title

Jonathan Dordick

5

object named as

Jonathan S Dordick

1 reference

Europe PubMed Central

30 July 2017

author name string

Diana I Paredes

1

1 reference

Europe PubMed Central

30 July 2017

Kyle Watters

2

1 reference

Europe PubMed Central

30 July 2017

Derek J Pitman

3

1 reference

Europe PubMed Central

30 July 2017

Christopher Bystroff

4

1 reference

Europe PubMed Central

30 July 2017

publication date

20 October 2011

1 reference

Europe PubMed Central

30 July 2017

BMC Structural Biology

1 reference

Europe PubMed Central

30 July 2017

11

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Europe PubMed Central

30 July 2017

42

1 reference

Europe PubMed Central

30 July 2017

https://scigraph.springernature.com/pub.10.1186/1472-6807-11-42

0 references

Site-specific hydration dynamics in the nonpolar core of a molten globule by dynamic nuclear polarization of water

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

Molecular cold-adaptation: comparative analysis of two homologous families of psychrophilic and mesophilic signal proteins of the protozoan ciliate, Euplotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

A review about nothing: are apolar cavities in proteins really empty?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

Exploring local flexibility/rigidity in psychrophilic and mesophilic carbonic anhydrases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

The Pfam protein families database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

Unfolding of ribonuclease A on silica nanoparticle surfaces.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

Cold-adapted enzymes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

Structure, dynamics and reactions of protein hydration water

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

Some like it cold: biocatalysis at low temperatures.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

Improved amino acid flexibility parameters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

Crystal structures of a psychrophilic metalloprotease reveal new insights into catalysis by cold-adapted proteases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

Low-temperature extremophiles and their applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

Stabilization of hen egg white lysozyme by a cavity-filling mutation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

Cold adapted enzymes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

The dynamics of protein hydration water: a quantitative comparison of molecular dynamics simulations and neutron-scattering experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

Psychrophilic enzymes: revisiting the thermodynamic parameters of activation may explain local flexibility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

Water penetration and escape in proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

Cold-adapted enzymes: from fundamentals to biotechnology.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

Structures of the psychrophilic Alteromonas haloplanctis alpha-amylase give insights into cold adaptation at a molecular level

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

Structural adaptations of the cold-active citrate synthase from an Antarctic bacterium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

Enzymatic catalysis and dynamics in low-water environments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 July 2018

"Cold spots" in protein cold adaptation: Insights from normalized atomic displacement parameters (B'-factors).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 October 2018

Comparative analysis of thermophilic and mesophilic proteins using Protein Energy Networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 October 2018

Searching protein structure databases with DaliLite v.3

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 October 2018

Protein flexibility in psychrophilic and mesophilic trypsins. Evidence of evolutionary conservation of protein dynamics in trypsin-like serine-proteases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 October 2018

Structural adaptation to low temperatures--analysis of the subunit interface of oligomeric psychrophilic enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 October 2018

Increasing protein stability through control of the nanoscale environment.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 October 2018

Psychrophilic microorganisms: challenges for life

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 October 2018

Molecular dynamics study of water penetration in staphylococcal nuclease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 October 2018

Statistical and molecular dynamics studies of buried waters in globular proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 October 2018

Increased flexibility as a strategy for cold adaptation: a comparative molecular dynamics study of cold- and warm-active uracil DNA glycosylase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 October 2018

Replacement of staphylococcal nuclease hydrophobic core residues with those from thermophilic homologues indicates packing is improved in some thermostable proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 October 2018

PGTdb: a database providing growth temperatures of prokaryotes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 October 2018

Comparative structural analysis of psychrophilic and meso- and thermophilic enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 October 2018

Binding of buried structural water increases the flexibility of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 October 2018

Cold adaptation of proteins. Purification, characterization, and sequence of the heat-labile subtilisin from the antarctic psychrophile Bacillus TA41.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224250

28 October 2018

Protein thermal stability, hydrogen bonds, and ion pairs

1 reference

https://pubmed.ncbi.nlm.nih.gov/22013889

12 December 2020

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inferred from PubMed ID database lookup

Biocatalytic plastics as active and stable materials for biotransformations

1 reference

https://pubmed.ncbi.nlm.nih.gov/22013889

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MASKER: improved solvent-excluded molecular surface area estimations using Boolean masks

1 reference

https://pubmed.ncbi.nlm.nih.gov/22013889

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Flexibility and enzymatic cold-adaptation: A comparative molecular dynamics investigation of the elastase family

1 reference

https://pubmed.ncbi.nlm.nih.gov/22013889

12 December 2020

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inferred from PubMed ID database lookup

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10.1186/1472-6807-11-42

1 reference

Europe PubMed Central

30 July 2017

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1 reference

Europe PubMed Central

30 July 2017

1 reference

Europe PubMed Central

30 July 2017

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