(Q34057230)

30 July 2017

title

Metaproteomic identification of diazotrophic methanotrophs and their localization in root tissues of field-grown rice plants (English)

1 reference

30 July 2017

1 reference

Kengo Kubota

3

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author name string

Zhihua Bao

1

1 reference

30 July 2017

Takashi Okubo

2

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30 July 2017

Yasuhiro Kasahara

4

1 reference

30 July 2017

Hirohito Tsurumaru

5

1 reference

30 July 2017

Mizue Anda

6

1 reference

30 July 2017

Seishi Ikeda

7

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30 July 2017

Kiwamu Minamisawa

8

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30 July 2017

language of work or name

English

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publication date

13 June 2014

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Applied and Environmental Microbiology

30 July 2017

published in

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30 July 2017

volume

80

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30 July 2017

issue

16

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30 July 2017

page(s)

5043-5052

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Low nitrogen fertilization adapts rice root microbiome to low nutrient environment by changing biogeochemical functions

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

A rice gene for microbial symbiosis, Oryza sativa CCaMK, reduces CH4 flux in a paddy field with low nitrogen input

5 July 2018

1 reference

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Methanotrophy induces nitrogen fixation during peatland development.

5 July 2018

1 reference

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Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

CARD-FISH for environmental microorganisms: technical advancement and future applications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Inhibition of methane oxidation by nitrogenous fertilizers in a paddy soil

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Functional characteristics of an endophyte community colonizing rice roots as revealed by metagenomic analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

XoxF is required for expression of methanol dehydrogenase in Methylobacterium extorquens AM1.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Environmental distribution and abundance of the facultative methanotroph Methylocella

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Characterization of metaproteomics in crop rhizospheric soil

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Community- and genome-based views of plant-associated bacteria: plant-bacterial interactions in soybean and rice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Nitrogen as a regulatory factor of methane oxidation in soils and sediments.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Development of a bacterial cell enrichment method and its application to the community analysis in soybean stems.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Aerobic vanillate degradation and C1 compound metabolism in Bradyrhizobium japonicum

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Systems biology: Functional analysis of natural microbial consortia using community proteomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Methylocella silvestris sp. nov., a novel methanotroph isolated from an acidic forest cambisol

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Population dynamics of type I and II methanotrophic bacteria in rice soils.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Detection and enumeration of methanotrophs in acidic Sphagnum peat by 16S rRNA fluorescence in situ hybridization, including the use of newly developed oligonucleotide probes for Methylocella palustris.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Detection of methanotroph diversity on roots of submerged rice plants by molecular retrieval of pmoA, mmoX, mxaF, and 16S rRNA and ribosomal DNA, including pmoA-based terminal restriction fragment length polymorphism profiling

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

nifH sequences and nitrogen fixation in type I and type II methanotrophs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Changes in activity and community structure of methane-oxidizing bacteria over the growth period of rice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Methylocella palustris gen. nov., sp. nov., a new methane-oxidizing acidophilic bacterium from peat bogs, representing a novel subtype of serine-pathway methanotrophs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Stimulation by ammonium-based fertilizers of methane oxidation in soil around rice roots

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

5 July 2018

Methanotrophic bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Genome-wide analytical approaches using semi-quantitative expression proteomics for aromatic hydrocarbon metabolism in Pseudomonas putida F1.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Functional investigation of methanol dehydrogenase-like protein XoxF in Methylobacterium extorquens AM1.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Biogeography of wetland rice methanotrophs.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Rice roots select for type I methanotrophs in rice field soil.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Evaluation of enzymatic cell treatments for application of CARD-FISH to methanogens.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Enumeration of methanotrophic bacteria in the cover soil of an aged municipal landfill

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

A nifH-based oligonucleotide microarray for functional diagnostics of nitrogen-fixing microorganisms

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Detecting active methanogenic populations on rice roots using stable isotope probing

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

NifH and NifD phylogenies: an evolutionary basis for understanding nitrogen fixation capabilities of methanotrophic bacteria

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Methanotrophic bacteria associated to rice roots: the cultivar effect assessed by T-RFLP and microarray analysis

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135783

Group-specific 16S rRNA targeted probes for the detection of type I and type II methanotrophs by fluorescence in situ hybridisation

28 October 2018

1 reference

12 December 2020

Enrichment, isolation and some properties of methane-utilizing bacteria

1 reference

12 December 2020

[Study of nucleotide sequences of nifH genes in methanotrophic bacteria]

1 reference

12 December 2020

Characteristics of a nitrogen-fixing methanotroph, Methylocystis T-1

1 reference

12 December 2020

An improved fluorescence in situ hybridization protocol for the identification of bacteria and archaea in marine sediments

1 reference

12 December 2020

Cross-feeding of methane carbon among bacteria on rice roots revealed by DNA-stable isotope probing

1 reference

12 December 2020

Mechanism of Methane Transport from the Rhizosphere to the Atmosphere through Rice Plants

1 reference

12 December 2020

Identifiers

DOI

10.1128/AEM.00969-14

1 reference

30 July 2017

1 reference

30 July 2017

1 reference