(Q34074439)

30 July 2017

title

Roles of mutation and recombination in the evolution of protein thermodynamics (English)

1 reference

30 July 2017

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2

Michael Levitt

1 reference

30 July 2017

Yu Xia

1

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language of work or name

English

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publication date

29 July 2002

1 reference

Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

published in

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30 July 2017

volume

99

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30 July 2017

issue

16

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30 July 2017

page(s)

10382-10387

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Recombinatoric exploration of novel folded structures: a heteropolymer-based model of protein evolutionary landscapes

30 July 2017

cites work

1 reference

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Why are proteins so robust to site mutations?

5 July 2018

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Recombination and the population structures of bacterial pathogens

5 July 2018

1 reference

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Protein folding theory: from lattice to all-atom models

5 July 2018

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Computational method to reduce the search space for directed protein evolution

5 July 2018

1 reference

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Prospects for ab initio protein structural genomics.

5 July 2018

1 reference

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Improving the performance of Rosetta using multiple sequence alignment information and global measures of hydrophobic core formation.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Buried charged surface in proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Native protein sequences are close to optimal for their structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Ab initio construction of protein tertiary structures using a hierarchical approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Ab initio folding of proteins using restraints derived from evolutionary information

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Modeling evolutionary landscapes: mutational stability, topology, and superfunnels in sequence space

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Neutral evolution of mutational robustness

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Protein structure prediction by global optimization of a potential energy function.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

The fundamentals of protein folding: bringing together theory and experiment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Semirational design of active tumor suppressor p53 DNA binding domain with enhanced stability

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

A simple model for evolution of proteins towards the global minimum of free energy.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Coupling the folding of homologous proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Rates of spontaneous mutation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

The sequences of small proteins are not extensively optimized for rapid folding by natural selection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Pathways for protein folding: is a new view needed?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Adaptive walks with noisy fitness measurements.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Clustering of meiotic double-strand breaks on yeast chromosome III

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

From Levinthal to pathways to funnels

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Prediction of protein secondary structure at better than 70% accuracy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Navigating the folding routes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Principles of protein folding--a perspective from simple exact models.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Natural Selection and the Concept of a Protein Space

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Selforganization of matter and the evolution of biological macromolecules

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Slightly Deleterious Mutant Substitutions in Evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Spin glasses and the statistical mechanics of protein folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Dominant forces in protein folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

The neutral theory of molecular evolution: A review of recent evidence

5 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

5 July 2018

https://api.crossref.org/works/10.1073%2FPNAS.162097799

Contributions of the polar, uncharged amino acids to the stability of staphylococcal nuclease: evidence for mutational effects on the free energy of the denatured state.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Optimal protein-folding codes from spin-glass theory

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Evolution of model proteins on a foldability landscape.

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162097799

Clonal divergence in Escherichia coli as a result of recombination, not mutation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162097799

Contributions of the ionizable amino acids to the stability of staphylococcal nuclease.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162097799

Emergence of Preferred Structures in a Simple Model of Protein Folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162097799

Hiking in the energy landscape in sequence space: a bumpy road to good folders

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Neutral evolution of model proteins: diffusion in sequence space and overdispersion

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=124923

Meiosis-induced double-strand break sites determined by yeast chromatin structure

28 October 2018

2 references

https://api.crossref.org/works/10.1073%2FPNAS.162097799

21 January 2018

https://pubmed.ncbi.nlm.nih.gov/12149452

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Continuity in evolution: on the nature of transitions

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162097799

The distribution of structures in evolving protein populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162097799

Why are proteins marginally stable?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162097799

Protein stability effects of a complete set of alanine substitutions in Arc repressor

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162097799

De novo protein design. II. Plasticity in sequence space

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.162097799

Are there pathways for protein folding?

21 January 2018

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1073/PNAS.162097799

Identifiers

DOI

10.1073/PNAS.162097799

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference