(Q34075015)

30 July 2017

title

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery (English)

1 reference

30 July 2017

main subject

whole genome sequencing

1 reference

1

Paul Stothard

1 reference

30 July 2017

Jung-Woo Choi

2

1 reference

30 July 2017

Urmila Basu

3

1 reference

30 July 2017

Jennifer M Sumner-Thomson

4

1 reference

30 July 2017

Yan Meng

5

1 reference

30 July 2017

Xiaoping Liao

6

1 reference

30 July 2017

Stephen S Moore

7

1 reference

30 July 2017

language of work or name

English

0 references

publication date

15 November 2011

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30 July 2017

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30 July 2017

volume

12

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30 July 2017

page(s)

559

1 reference

In-depth annotation of SNPs arising from resequencing projects using NGS-SNP

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

Genome structural variation discovery and genotyping

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

Database resources of the National Center for Biotechnology Information

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

Genome-wide association and genomic selection in animal breeding

5 July 2018

1 reference

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Ongoing and future developments at the Universal Protein Resource

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

Copy number variation in the bovine genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

Characterization of missing human genome sequences and copy-number polymorphic insertions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

agriGO: a GO analysis toolkit for the agricultural community

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

Identification of copy number variations and common deletion polymorphisms in cattle

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

Analysis of copy number variations among diverse cattle breeds.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

BLAST+: architecture and applications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

Personalized copy number and segmental duplication maps using next-generation sequencing.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

Whole genome sequencing of a single Bos taurus animal for single nucleotide polymorphism discovery

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

Mapping genes for complex traits in domestic animals and their use in breeding programmes

5 July 2018

1 reference

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Bos taurus genome assembly

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

A whole-genome assembly of the domestic cow, Bos taurus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

The genome sequence of taurine cattle: a window to ruminant biology and evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

CNV-seq, a new method to detect copy number variation using high-throughput sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

Milestones in beef cattle genetic evaluation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

Reduced purifying selection prevails over positive selection in human copy number variant evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

FASTSNP: an always up-to-date and extendable service for SNP function analysis and prioritization.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

Major advances in determining appropriate selection goals

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

Bias of selection on human copy-number variants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

A greedy algorithm for aligning DNA sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

Gene ontology: tool for the unification of biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229636

Human Gene Mutation Database (HGMD): 2003 update

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-12-559

Accelerated expansion of group IID-like phospholipase A2 genes in Bos taurus

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-12-559

Animal QTLdb: beyond a repository. A public platform for QTL comparisons and integration with diverse types of structural genomic information

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22085807

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-12-559

1 reference

30 July 2017

1 reference

30 July 2017

1 reference