(Q34077769)

30 July 2017

title

Whole-genome comparison of two Campylobacter jejuni isolates of the same sequence type reveals multiple loci of different ancestral lineage (English)

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30 July 2017

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Campylobacter jejuni

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based on heuristic

inferred from title

whole genome sequencing

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Patrick J Biggs

1

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Paul Fearnhead

object named as

Paul Fearnhead

2

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Vathsala Mohan

object named as

Vathsala Mohan

4

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Julie Collins-Emerson

5

object named as

Julie Collins-Emerson

1 reference

30 July 2017

Nigel P French

10

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author name string

Grant Hotter

3

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30 July 2017

Errol Kwan

6

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30 July 2017

Thomas E Besser

7

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30 July 2017

Adrian Cookson

8

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30 July 2017

Philip E Carter

9

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30 July 2017

language of work or name

English

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publication date

11 November 2011

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30 July 2017

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30 July 2017

volume

6

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30 July 2017

issue

11

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30 July 2017

page(s)

e27121

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Creative Commons Attribution 4.0 International

30 July 2017

copyright license

start time

11 November 2011

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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The prevalence and genetic diversity of Campylobacter spp. in domestic 'backyard' poultry in Canterbury, New Zealand.

5 July 2018

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Niche segregation and genetic structure of Campylobacter jejuni populations from wild and agricultural host species.

5 July 2018

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Marked campylobacteriosis decline after interventions aimed at poultry, New Zealand

5 July 2018

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Introgression in the genus Campylobacter: generation and spread of mosaic alleles

5 July 2018

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Evolution of an agriculture-associated disease causing Campylobacter coli clade: evidence from national surveillance data in Scotland

5 July 2018

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Genomic characterization of Campylobacter jejuni strain M1.

5 July 2018

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Evolutionary dynamics of complete Campylobacter pan-genomes and the bacterial species concept

5 July 2018

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Molecular epidemiology of Campylobacter jejuni in a geographically isolated country with a uniquely structured poultry industry

5 July 2018

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Assembly complexity of prokaryotic genomes using short reads

5 July 2018

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Sequencing technologies - the next generation

5 July 2018

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The Pfam protein families database

5 July 2018

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5 July 2018

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Microbial comparative pan-genomics using binomial mixture models

5 July 2018

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Circos: an information aesthetic for comparative genomics

5 July 2018

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5 July 2018

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Fast and accurate short read alignment with Burrows-Wheeler transform

5 July 2018

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Pervasive, genome-wide positive selection leading to functional divergence in the bacterial genus Campylobacter.

5 July 2018

1 reference

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Estimating the size of the bacterial pan-genome

5 July 2018

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Rapid evolution and the importance of recombination to the gastroenteric pathogen Campylobacter jejuni

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Extended sequence typing of Campylobacter spp., United Kingdom

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Tracing the source of campylobacteriosis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Mapping short DNA sequencing reads and calling variants using mapping quality scores

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Comparative genomic analyses of seventeen Streptococcus pneumoniae strains: insights into the pneumococcal supragenome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Campylobacters as zoonotic pathogens: a food production perspective.

5 July 2018

1 reference

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Minimus: a fast, lightweight genome assembler

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Identifying bacterial genes and endosymbiont DNA with Glimmer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Inference of bacterial microevolution using multilocus sequence data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Is the major increase in notified campylobacteriosis in New Zealand real?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Application of phylogenetic networks in evolutionary studies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Analysis of recombination in Campylobacter jejuni from MLST population data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Automated generation of heuristics for biological sequence comparison

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Matrix2png: a utility for visualizing matrix data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Comparative genotyping of Campylobacter jejuni by amplified fragment length polymorphism, multilocus sequence typing, and short repeat sequencing: strain diversity, host range, and recombination

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Molecular characterization of Campylobacter jejuni clones: a basis for epidemiologic investigation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

SSAHA: a fast search method for large DNA databases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Recombination and the population structures of bacterial pathogens

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Artemis: sequence visualization and annotation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

EMBOSS: the European Molecular Biology Open Software Suite

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Improved microbial gene identification with GLIMMER

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Microbial gene identification using interpolated Markov models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Discrimination of Campylobacter jejuni isolates by fla gene sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Optimal alignments in linear space

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Genomic organization and expression of Campylobacter flagellin genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Basic local alignment search tool

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Genomic variations define divergence of water/wildlife-associated Campylobacter jejuni niche specialists from common clonal complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Assigning the source of human campylobacteriosis in New Zealand: a comparative genetic and epidemiological approach.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

A comparison of homologous recombination rates in bacteria and archaea.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Convergence of Campylobacter species: implications for bacterial evolution.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Comparative genome assembly.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Seawater Activation of Escherichia coli Gene Promoter Elements: Dominance of rpoS Control.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

Wide geographical distribution of internationally rare Campylobacter clones within New Zealand

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214069

10.1371/JOURNAL.PONE.0027121

28 October 2018

Identifiers

DOI

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30 July 2017

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30 July 2017

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