(Q34078456)

30 July 2017

Characterization of the folding landscape of monomeric lactose repressor: quantitative comparison of theory and experiment (English)

1 reference

Pernilla Wittung-Stafshede

30 July 2017

4

1 reference

30 July 2017

6

Cecilia Clementi

1 reference

30 July 2017

Payel Das

1

1 reference

30 July 2017

Corey J Wilson

2

1 reference

30 July 2017

Giovanni Fossati

3

1 reference

30 July 2017

Kathleen S Matthews

5

1 reference

30 July 2017

language of work or name

English

0 references

publication date

3 October 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

1 reference

30 July 2017

102

1 reference

30 July 2017

41

1 reference

30 July 2017

14569-14574

1 reference

The experimental folding landscape of monomeric lactose repressor, a large two-domain protein, involves two kinetic intermediates

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Three-body interactions improve the prediction of rate and mechanism in protein folding models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

The effects of nonnative interactions on protein folding rates: theory and simulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Theory of protein folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Coarse-grained sequences for protein folding and design

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Contact order revisited: influence of protein size on the folding rate

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

The structural basis for biphasic kinetics in the folding of the WW domain from a formin-binding protein: lessons for protein design?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

The topomer search model: A simple, quantitative theory of two-state protein folding kinetics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Probing the folding free energy landscape of the Src-SH3 protein domain

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Topological determinants of protein folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

How the folding rate constant of simple, single-domain proteins depends on the number of native contacts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Constructing, verifying, and dissecting the folding transition state of chymotrypsin inhibitor 2 with all-atom simulations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Prediction of folding mechanism for circular-permuted proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

From folding theories to folding proteins: a review and assessment of simulation studies of protein folding and unfolding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Keeping it in the family: folding studies of related proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Mechanisms of protein folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Matching simulation and experiment: a new simplified model for simulating protein folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

How native-state topology affects the folding of dihydrofolate reductase and interleukin-1beta

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Protein folding mechanisms: new methods and emerging ideas

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Polymer principles and protein folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Contact order, transition state placement and the refolding rates of single domain proteins.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Theory of protein folding: the energy landscape perspective

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Navigating the folding routes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Funnels, pathways, and the energy landscape of protein folding: a synthesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Theoretical Studies of Protein Folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Protein folding funnels: a kinetic approach to the sequence-structure relationship

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1253569

Solvation effects and driving forces for protein thermodynamic and kinetic cooperativity: how adequate is native-centric topological modeling?

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505844102

Protein engineering study of protein L by simulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505844102

Optimal combination of theory and experiment for the characterization of the protein folding landscape of S6: how far can a minimalist model go?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505844102

The origins of asymmetry in the folding transition states of protein L and protein G.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505844102

Roles of native topology and chain-length scaling in protein folding: a simulation study with a Go-like model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505844102

Comparison between long-range interactions and contact order in determining the folding rate of two-state proteins: application of long-range order to folding rate prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505844102

Switching two-state to three-state kinetics in the helical protein Im9 via the optimisation of stabilising non-native interactions by design.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505844102

Speeding protein folding beyond the G(o) model: how a little frustration sometimes helps

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505844102

Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505844102

An Algorithm for Least-Squares Estimation of Nonlinear Parameters

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505844102

Quantifying the roughness on the free energy landscape: entropic bottlenecks and protein folding rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505844102

Vibrational Dynamics of Folded Proteins: Significance of Slow and Fast Motions in Relation to Function and Stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505844102

Gaussian Dynamics of Folded Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505844102

Chain length is the main determinant of the folding rate for proteins with three-state folding kinetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505844102

Exploring structures in protein folding funnels with free energy functionals: the transition state ensemble

21 January 2018

1 reference

12 December 2020

New Monte Carlo technique for studying phase transitions

1 reference

12 December 2020

Finding the right fold

1 reference

12 December 2020

Interplay among tertiary contacts, secondary structure formation and side-chain packing in the protein folding mechanism: all-atom representation study of protein L

1 reference

12 December 2020

Kinetics and thermodynamics of folding of a de novo designed four-helix bundle protein

1 reference

12 December 2020

Prediction of folding rates and transition-state placement from native-state geometry

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0505844102

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference