(Q34087821)

30 July 2017

RAxML and FastTree: comparing two methods for large-scale maximum likelihood phylogeny estimation (English)

1 reference

30 July 2017

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3

Tandy Warnow

1 reference

30 July 2017

2

C Randal Linder

1 reference

30 July 2017

Kevin Liu

1

1 reference

PubMed ID

22132132

30 July 2017

language of work or name

English

0 references

publication date

21 November 2011

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30 July 2017

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30 July 2017

6

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30 July 2017

11

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30 July 2017

e27731

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Creative Commons Attribution 4.0 International

30 July 2017

start time

21 November 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Multiple sequence alignment: a major challenge to large-scale phylogenetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3221724

FastTree: computing large minimum evolution trees with profiles instead of a distance matrix

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3221724

A rapid bootstrap algorithm for the RAxML Web servers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3221724

Recent developments in the MAFFT multiple sequence alignment program

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3221724

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3221724

MAFFT version 5: improvement in accuracy of multiple sequence alignment

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3221724

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3221724

Rose: generating sequence families.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3221724

SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3221724

FastTree 2--approximately maximum-likelihood trees for large alignments

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3221724

Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3221724

PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3221724

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3221724

MRBAYES: Bayesian inference of phylogenetic trees

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3221724

10.1371/JOURNAL.PONE.0027731

28 October 2018

Identifiers

DOI

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference

PubMed ID

22132132