(Q34108066)

31 July 2017

title

Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California (English)

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31 July 2017

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Tijana Glavina Del Rio

8

Tijana Glavina Del Rio

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Susannah G. Tringe

Susannah Tringe

13

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Janet K Jansson

Janet Jansson

11

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Amrita Pati

12

Amrita Pati

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31 July 2017

6

Marcel Huntemann

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31 July 2017

Stephanie A. Malfatti

4

Stephanie Malfatti

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31 July 2017

7

Amy Chen

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31 July 2017

10

Alex Copeland

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31 July 2017

14

Jack A Gilbert

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31 July 2017

5

Ioanna Pagani

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31 July 2017

1

Erik R Hawley

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31 July 2017

2

Hailan Piao

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31 July 2017

15

Thomas D Lorenson

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31 July 2017

16

Matthias Hess

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31 July 2017

Nicole M Scott

3

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31 July 2017

Brian Foster

9

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31 July 2017

publication date

2 January 2014

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Standards in genomic sciences

31 July 2017

published in

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31 July 2017

volume

9

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31 July 2017

issue

3

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31 July 2017

page(s)

1259-1274

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maintained by WikiProject

31 July 2017

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Enzymes involved in the anaerobic oxidation of n-alkanes: from methane to long-chain paraffins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Metagenomic analysis and metabolite profiling of deep-sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Anaerobic methane oxidation in metalliferous hydrothermal sediments: influence on carbon flux and decoupling from sulfate reduction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Microbial community analysis of a coastal salt marsh affected by the Deepwater Horizon oil spill

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Characterization of the anaerobic microbial community in oil-polluted subtidal sediments: aromatic biodegradation potential after the Prestige oil spill.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Anaerobic Oxidation of Methane at a Marine Methane Seep in a Forearc Sediment Basin off Sumatra, Indian Ocean

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

The Pfam protein families database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

IMG/M: the integrated metagenome data management and comparative analysis system

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Accelerated Profile HMM Searches

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

A metagenomic study of methanotrophic microorganisms in Coal Oil Point seep sediments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

FLASH: fast length adjustment of short reads to improve genome assemblies

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Anaerobic oxidation of methane with sulfate: on the reversibility of the reactions that are catalyzed by enzymes also involved in methanogenesis from CO2.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Complete genome sequence of Sulfurimonas autotrophica type strain (OK10).

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

A persistent oxygen anomaly reveals the fate of spilled methane in the deep Gulf of Mexico

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Deep-sea oil plume enriches indigenous oil-degrading bacteria

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Prodigal: prokaryotic gene recognition and translation initiation site identification

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Spatial structure and activity of sedimentary microbial communities underlying a Beggiatoa spp. mat in a Gulf of Mexico hydrocarbon seep

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Bacterial communities from shoreline environments (costa da morte, northwestern Spain) affected by the prestige oil spill

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Depth-resolved quantification of anaerobic toluene degraders and aquifer microbial community patterns in distinct redox zones of a tar oil contaminant plume.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Desulfatiferula olefinivorans gen. nov., sp. nov., a long-chain n-alkene-degrading, sulfate-reducing bacterium

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Sulfurospirillum cavolei sp. nov., a facultatively anaerobic sulfur-reducing bacterium isolated from an underground crude oil storage cavity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Oceanic methane biogeochemistry

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

MetaGene: prokaryotic gene finding from environmental genome shotgun sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Marine microorganisms make a meal of oil.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Sulfuricurvum kujiense gen. nov., sp. nov., a facultatively anaerobic, chemolithoautotrophic, sulfur-oxidizing bacterium isolated from an underground crude-oil storage cavity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Reverse methanogenesis: testing the hypothesis with environmental genomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

The COG database: an updated version includes eukaryotes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Characterization of an autotrophic sulfide-oxidizing marine Arcobacter sp. that produces filamentous sulfur.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Gene ontology: tool for the unification of biology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Methane-consuming archaebacteria in marine sediments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Microbial populations and hydrocarbon biodegradation potentials in fertilized shoreline sediments affected by the T/V Exxon Valdez oil spill

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Insights into the phylogeny and coding potential of microbial dark matter

28 July 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.5029016

Evaluating bacterial community structures in oil collected from the sea surface and sediment in the northern Gulf of Mexico after the Deepwater Horizon oil spill

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.5029016

The minimum information about a genome sequence (MIGS) specification

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.5029016

Search and clustering orders of magnitude faster than BLAST

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.5029016

GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.5029016

FragGeneScan: predicting genes in short and error-prone reads

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.5029016

Genome of the Epsilonproteobacterial Chemolithoautotroph Sulfurimonas denitrificans

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.5029016

Manganese- and iron-dependent marine methane oxidation

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.5029016

A marine microbial consortium apparently mediating anaerobic oxidation of methane

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.5029016

Zero-valent sulphur is a key intermediate in marine methane oxidation

21 January 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

28 October 2018

https://api.crossref.org/works/10.4056%2FSIGS.5029016

Microbial community structure of a heavy fuel oil-degrading marine consortium: linking microbial dynamics with polycyclic aromatic hydrocarbon utilization

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4149020

Integrated metagenomic and metaproteomic analyses of an ANME-1-dominated community in marine cold seep sediments

28 October 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.5029016

Effectiveness of bioremediation for the Exxon Valdez oil spill

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.5029016

The mystery of the missing oil plume

21 January 2018

1 reference

https://api.crossref.org/works/10.4056%2FSIGS.5029016

A fast and symmetric DUST implementation to mask low-complexity DNA sequences

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25197496

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25197496

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.4056/SIGS.5029016

1 reference

Dimensions Publication ID

31 July 2017

0 references

1 reference

31 July 2017

1 reference