(Q34115510)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25092923%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

title

Modeling epigenome folding: formation and dynamics of topologically associated chromatin domains (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25092923%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25092923%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

author name string

Pascal Carrivain

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25092923%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

Giacomo Cavalli

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25092923%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

Cédric Vaillant

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25092923%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

language of work or name

English

0 references

publication date

4 August 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25092923%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25092923%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

volume

42

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25092923%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

issue

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25092923%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

page(s)

9553-9561

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25092923%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

12 March 2020

copyright license

start time

10 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Chromosome positioning from activity-based segregation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

How chromatin looping and nuclear envelope attachment affect genome organization in eukaryotic cell nuclei

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Organization of the mitotic chromosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Cohesin-mediated interactions organize chromosomal domain architecture

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

SAM domain polymerization links subnuclear clustering of PRC1 to gene silencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

High-throughput chromatin motion tracking in living yeast reveals the flexibility of the fiber throughout the genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Architectural protein subclasses shape 3D organization of genomes during lineage commitment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Chromatin architectures and Hox gene collinearity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Master transcription factors and mediator establish super-enhancers at key cell identity genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Colocalization of coregulated genes: a steered molecular dynamics study of human chromosome 19.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

A conformational switch in HP1 releases auto-inhibition to drive heterochromatin assembly

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Genome-wide chromatin state transitions associated with developmental and environmental cues

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Recovering ensembles of chromatin conformations from contact probabilities

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Complexity of chromatin folding is captured by the strings and binders switch model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Independence of repressive histone marks and chromatin compaction during senescent heterochromatic layer formation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

A bridging model for persistence of a polycomb group protein complex through DNA replication in vitro

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Expression-dependent folding of interphase chromatin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Topological domains in mammalian genomes identified by analysis of chromatin interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Three-dimensional folding and functional organization principles of the Drosophila genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

A view of the chromatin landscape

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Theoretical analysis of the role of chromatin interactions in long-range action of enhancers and insulators

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Chromatin: constructing the big picture

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Mapping and analysis of chromatin state dynamics in nine human cell types

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Enhancer function: new insights into the regulation of tissue-specific gene expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Systematic protein location mapping reveals five principal chromatin types in Drosophila cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Diffusion-driven looping provides a consistent framework for chromatin organization

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Mediator and cohesin connect gene expression and chromatin architecture

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Looping probabilities in model interphase chromosomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Global chromatin architecture reflects pluripotency and lineage commitment in the early mouse embryo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Nuclear pore proteins nup153 and megator define transcriptionally active regions in the Drosophila genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Structure and dynamics of interphase chromosomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

GC- and AT-rich chromatin domains differ in conformation and histone modification status and are differentially modulated by Rpd3p

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

Nuclear organization of the genome and the potential for gene regulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4150797

LBR and lamin A/C sequentially tether peripheral heterochromatin and inversely regulate differentiation.

5 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU698

Conformational transitions of heteropolymers in dilute solutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU698

Simulation of stochastic network dynamics via entropic matching

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU698

Are Biological Systems Poised at Criticality?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU698

Bifurcation in epigenetics: implications in development, proliferation, and diseases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU698

The dynamic architecture of Hox gene clusters.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU698

A Predictive Computational Model of the Dynamic 3D Interphase Yeast Nucleus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU698

Molecular dynamics simulation study of nonconcatenated ring polymers in a melt. I. Statics

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25092923

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Ring polymers in the melt state: the physics of crumpling

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25092923

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Chromatin compaction by a polycomb group protein complex

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25092923

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKU698

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25092923%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25092923%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

PubMed publication ID

25092923

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25092923%20AND%20SRC:MED&resulttype=core&format=json