(Q34125835)

English

A divalent cation stabilizes the active conformation of the B. subtilis RNase P x pre-tRNA complex: a role for an inner-sphere metal ion in RNase P.

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scholarly article

1 reference

Europe PubMed Central

31 July 2017

A divalent cation stabilizes the active conformation of the B. subtilis RNase P x pre-tRNA complex: a role for an inner-sphere metal ion in RNase P. (English)

1 reference

Europe PubMed Central

31 July 2017

Carol A. Fierke

6

object named as

Carol A Fierke

1 reference

Europe PubMed Central

31 July 2017

author name string

John Hsieh

1

1 reference

Europe PubMed Central

31 July 2017

Kristin S Koutmou

2

1 reference

Europe PubMed Central

31 July 2017

David Rueda

3

1 reference

Europe PubMed Central

31 July 2017

Markos Koutmos

4

1 reference

Europe PubMed Central

31 July 2017

Nils G Walter

5

1 reference

Europe PubMed Central

31 July 2017

language of work or name

0 references

publication date

29 April 2010

1 reference

Europe PubMed Central

31 July 2017

Journal of Molecular Biology

1 reference

Europe PubMed Central

31 July 2017

400

1 reference

Europe PubMed Central

31 July 2017

1

1 reference

Europe PubMed Central

31 July 2017

38-51

1 reference

Europe PubMed Central

31 July 2017

NMR and XAS reveal an inner-sphere metal binding site in the P4 helix of the metallo-ribozyme ribonuclease P.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Protein-precursor tRNA contact leads to sequence-specific recognition of 5' leaders by bacterial ribonuclease P

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Competition between Co(NH(3)(6)3+ and inner sphere Mg2+ ions in the HDV ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Identification of catalytic metal ion ligands in ribozymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Conformational change in the Bacillus subtilis RNase P holoenzyme--pre-tRNA complex enhances substrate affinity and limits cleavage rate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

RNase P RNA-mediated cleavage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Pre-tRNA turnover catalyzed by the yeast nuclear RNase P holoenzyme is limited by product release

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Synthetic antibodies for specific recognition and crystallization of structured RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Importance of RNA-protein interactions in bacterial ribonuclease P structure and catalysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Evidence that binding of C5 protein to P RNA enhances ribozyme catalysis by influencing active site metal ion affinity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Probing the architecture of the B. subtilis RNase P holoenzyme active site by cross-linking and affinity cleavage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Structural plasticity and Mg2+ binding properties of RNase P P4 from combined analysis of NMR residual dipolar couplings and motionally decoupled spin relaxation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Evidence that substrate-specific effects of C5 protein lead to uniformity in binding and catalysis by RNase P.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Crystal structure of a bacterial ribonuclease P RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Ions and RNA folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Studies on Escherichia coli RNase P RNA with Zn2+ as the catalytic cofactor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Metal ions and RNA folding: a highly charged topic with a dynamic future

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Ionic interactions between PRNA and P protein in Bacillus subtilis RNase P characterized using a magnetocapture-based assay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Recent insights into the structure and function of the ribonucleoprotein enzyme ribonuclease P.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

High-resolution structure of RNase P protein from Thermotoga maritima

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Metal ions in the structure and function of RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Specific phosphorothioate substitutions probe the active site of Bacillus subtilis ribonuclease P.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Dissection of a metal-ion-mediated conformational change in Tetrahymena ribozyme catalysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

The rate-limiting step in the folding of a large ribozyme without kinetic traps

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Structural dynamics of catalytic RNA highlighted by fluorescence resonance energy transfer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Ribozyme structures and mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Modular construction for function of a ribonucleoprotein enzyme: the catalytic domain of Bacillus subtilis RNase P complexed with B. subtilis RNase P protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Ribonuclease P: a ribonucleoprotein enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Helix P4 is a divalent metal ion binding site in the conserved core of the ribonuclease P ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

The structure of ribonuclease P protein from Staphylococcus aureus reveals a unique binding site for single-stranded RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Structural effects of cobalt-amine compounds on DNA condensation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

On the role of magnesium ions in RNA stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Protein component of the ribozyme ribonuclease P alters substrate recognition by directly contacting precursor tRNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

The protein component of Bacillus subtilis ribonuclease P increases catalytic efficiency by enhancing interactions with the 5' leader sequence of pre-tRNAAsp.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Ribonuclease P protein structure: evolutionary origins in the translational apparatus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Molecular movement inside the translational engine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

In vitro selection for altered divalent metal specificity in the RNase P RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Multiple tertiary interactions involving domain II of group II self-splicing introns.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

In vitro selection of RNase P RNA reveals optimized catalytic activity in a highly conserved structural domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Ribonuclease P (RNase P) RNA is converted to a Cd(2+)-ribozyme by a single Rp-phosphorothioate modification in the precursor tRNA at the RNase P cleavage site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

A general two-metal-ion mechanism for catalytic RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Spectroscopic Determination of Tryptophan and Tyrosine in Proteins*

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Calculation of protein extinction coefficients from amino acid sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Synthesis of small RNAs using T7 RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Thermodynamics of ligand-nucleic acid interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Influence of metal ions on the ribonuclease P reaction. Distinguishing substrate binding from catalysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Ion effects on ligand-nucleic acid interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

5 July 2018

Evidence for induced fit in bacterial RNase P RNA-mediated cleavage.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

28 October 2018

The P4 metal binding site in RNase P RNA affects active site metal affinity through substrate positioning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

28 October 2018

The 5' leader of precursor tRNAAsp bound to the Bacillus subtilis RNase P holoenzyme has an extended conformation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

28 October 2018

tRNA selection and kinetic proofreading in translation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

28 October 2018

Analysis of solvent nucleophile isotope effects: evidence for concerted mechanisms and nucleophilic activation by metal coordination in nonenzymatic and ribozyme-catalyzed phosphodiester hydrolysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

28 October 2018

Nature of the chemical bond formed with the structural metal ion at the A9/G10.1 motif derived from hammerhead ribozymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

28 October 2018

Diffusely bound Mg2+ ions slightly reorient stems I and II of the hammerhead ribozyme to increase the probability of formation of the catalytic core.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

28 October 2018

Conservation of helical structure contributes to functional metal ion interactions in the catalytic domain of ribonuclease P RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

28 October 2018

Evidence for helical unwinding of an RNA substrate by the RNA enzyme RNase P: use of an interstrand disulfide crosslink in substrate.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

28 October 2018

Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

28 October 2018

Derivation of the three-dimensional architecture of bacterial ribonuclease P RNAs from comparative sequence analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

28 October 2018

A conformational switch in Escherichia coli 16S ribosomal RNA during decoding of messenger RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

28 October 2018

Identification of phosphates involved in catalysis by the ribozyme RNase P RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939038

28 October 2018

Rapid mutagenesis and purification of phage RNA polymerases

1 reference

https://pubmed.ncbi.nlm.nih.gov/20434461

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of the RNA component of bacterial ribonuclease P

1 reference

https://pubmed.ncbi.nlm.nih.gov/20434461

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA shows its metal

1 reference

https://pubmed.ncbi.nlm.nih.gov/20434461

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural perspective on the activation of RNase P RNA by protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/20434461

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cobalt hexammine inhibition of the hammerhead ribozyme

1 reference

https://pubmed.ncbi.nlm.nih.gov/20434461

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Magnesium ions are required by Bacillus subtilis ribonuclease P RNA for both binding and cleaving precursor tRNAAsp

1 reference

https://pubmed.ncbi.nlm.nih.gov/20434461

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mg2+-dependent folding of a large ribozyme without kinetic traps

1 reference

https://pubmed.ncbi.nlm.nih.gov/20434461

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The cleavage step of ribonuclease P catalysis is determined by ribozyme-substrate interactions both distal and proximal to the cleavage site

1 reference

https://pubmed.ncbi.nlm.nih.gov/20434461

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The affinity of magnesium binding sites in the Bacillus subtilis RNase P x pre-tRNA complex is enhanced by the protein subunit

1 reference

https://pubmed.ncbi.nlm.nih.gov/20434461

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of metal ions in the hydrolysis reaction catalyzed by RNase P RNA from Bacillus subtilis

1 reference

https://pubmed.ncbi.nlm.nih.gov/20434461

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Metallobiochemistry of RNA. Co(NH3)6(3+) as a probe for Mg2+(aq) binding sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/20434461

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein component of Bacillus subtilis RNase P specifically enhances the affinity for precursor-tRNAAsp

1 reference

https://pubmed.ncbi.nlm.nih.gov/20434461

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.JMB.2010.04.050

1 reference

Europe PubMed Central

31 July 2017

1 reference

Europe PubMed Central

31 July 2017

1 reference

Europe PubMed Central

31 July 2017

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