(Q34131851)

31 July 2017

Nucleic acid sequence design via efficient ensemble defect optimization (English)

1 reference

31 July 2017

3

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author name string

Joseph N Zadeh

series ordinal

1

1 reference

PubMed ID

20717905

31 July 2017

Brian R Wolfe

series ordinal

2

1 reference

PubMed ID

20717905

31 July 2017

Niles A Pierce

series ordinal

3

1 reference

31 July 2017

17 August 2010

1 reference

Journal of Computational Chemistry

31 July 2017

1 reference

31 July 2017

32

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31 July 2017

439-452

1 reference

31 July 2017

3

1 reference

Rational design of DNA nanoarchitectures

31 July 2017

1 reference

21 January 2018

1 reference

Thermodynamic Analysis of Interacting Nucleic Acid Strands

21 January 2018

1 reference

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

21 January 2018

1 reference

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

21 January 2018

1 reference

The thermodynamics of DNA structural motifs

21 January 2018

1 reference

Thermodynamic properties of DNA sequences: characteristic values for the human genome.

21 January 2018

1 reference

RNA secondary structures and their prediction

21 January 2018

1 reference

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

21 January 2018

1 reference

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

21 January 2018

1 reference

Fast folding and comparison of RNA secondary structures

21 January 2018

1 reference

Fast evaluation of internal loops in RNA secondary structure prediction.

21 January 2018

1 reference

An algorithm for computing nucleic acid base-pairing probabilities including pseudoknots

21 January 2018

1 reference

Prediction of hybridization and melting for double-stranded nucleic acids

21 January 2018

1 reference

Secondary structure prediction of interacting RNA molecules.

21 January 2018

1 reference

Partition function and base pairing probabilities of RNA heterodimers

21 January 2018

1 reference

A new algorithm for RNA secondary structure design

21 January 2018

1 reference

INFO-RNA--a fast approach to inverse RNA folding.

21 January 2018

1 reference

Computational RNA secondary structure design: empirical complexity and improved methods

21 January 2018

1 reference

RNA secondary structure design.

21 January 2018

1 reference

Paradigms for computational nucleic acid design

21 January 2018

1 reference

Design of multistable RNA molecules

21 January 2018

1 reference

A partition function algorithm for nucleic acid secondary structure including pseudoknots

21 January 2018

1 reference

Prediction of RNA base pairing probabilities on massively parallel computers.

21 January 2018

1 reference

Nucleic acid junctions and lattices

21 January 2018

1 reference

A statistical sampling algorithm for RNA secondary structure prediction

21 January 2018

1 reference

Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization

21 January 2018

1 reference

RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble

21 January 2018

1 reference

Correlation between the secondary structure of pre-mRNA introns and the efficiency of splicing in Saccharomyces cerevisiae.

21 January 2018

1 reference

Improved RNA secondary structure prediction by maximizing expected pair accuracy

21 January 2018

1 reference

Triggered amplification by hybridization chain reaction

21 January 2018

1 reference

Design of siRNAs producing unstructured guide-RNAs results in improved RNA interference efficiency.

21 January 2018

1 reference

Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes

21 January 2018

1 reference

Programming biomolecular self-assembly pathways

21 January 2018

1 reference

An autonomous polymerization motor powered by DNA hybridization

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/JCC.21633

1 reference

31 July 2017

journals/jcc/ZadehWP11

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

20717905