(Q34146332)

31 July 2017

title

Multiple roles of the RNA polymerase {beta}' SW2 region in transcription initiation, promoter escape, and RNA elongation (English)

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31 July 2017

5

Irina Artsimovitch

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author name string

Danil Pupov

1

1 reference

31 July 2017

Nataliya Miropolskaya

2

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31 July 2017

Anastasiya Sevostyanova

3

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31 July 2017

Irina Bass

4

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31 July 2017

Andrey Kulbachinskiy

6

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31 July 2017

language of work or name

English

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publication date

10 May 2010

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31 July 2017

published in

Nucleic Acids Research

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31 July 2017

volume

38

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31 July 2017

issue

17

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31 July 2017

page(s)

5784-5796

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Creative Commons Attribution-NonCommercial 2.5 Generic

31 July 2017

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Structure of an RNA Polymerase II-TFIIB Complex and the Transcription Initiation Mechanism

5 July 2018

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5 July 2018

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RNA polymerase II-TFIIB structure and mechanism of transcription initiation

5 July 2018

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Direct detection of abortive RNA transcripts in vivo

5 July 2018

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Allosteric control of Escherichia coli rRNA promoter complexes by DksA.

5 July 2018

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Evidence for a tyrosine-adenine stacking interaction and for a short-lived open intermediate subsequent to initial binding of Escherichia coli RNA polymerase to promoter DNA

5 July 2018

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The RNA polymerase "switch region" is a target for inhibitors

5 July 2018

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Monitoring abortive initiation

5 July 2018

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Transcription inactivation through local refolding of the RNA polymerase structure

5 July 2018

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Structural basis of transcription inhibition by alpha-amanitin and implications for RNA polymerase II translocation

5 July 2018

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Control of the timing of promoter escape and RNA catalysis by the transcription factor IIb fingertip

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943606

Late steps in the formation of E. coli RNA polymerase-lambda P R promoter open complexes: characterization of conformational changes by rapid [perturbant] upshift experiments

5 July 2018

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TFIIB and the regulation of transcription by RNA polymerase II.

5 July 2018

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Structural basis for substrate loading in bacterial RNA polymerase

5 July 2018

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Structural basis for transcription elongation by bacterial RNA polymerase

5 July 2018

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The -11A of promoter DNA and two conserved amino acids in the melting region of sigma70 both directly affect the rate limiting step in formation of the stable RNA polymerase-promoter complex, but they do not necessarily interact

5 July 2018

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Structural Basis for Converting a General Transcription Factor into an Operon-Specific Virulence Regulator

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943606

Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis

5 July 2018

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Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism

5 July 2018

1 reference

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Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943606

The role of the lid element in transcription by E. coli RNA polymerase

5 July 2018

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A functional role for the switch 2 region of yeast RNA polymerase II in transcription start site utilization and abortive initiation

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943606

The interaction between sigma70 and the beta-flap of Escherichia coli RNA polymerase inhibits extension of nascent RNA during early elongation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943606

Discrimination against deoxyribonucleotide substrates by bacterial RNA polymerase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943606

Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943606

Promoter clearance and escape in prokaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943606

Kinetic studies and structural models of the association of E. coli sigma(70) RNA polymerase with the lambdaP(R) promoter: large scale conformational changes in forming the kinetically significant intermediates

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943606

Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943606

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943606

Structure-based analysis of RNA polymerase function: the largest subunit's rudder contributes critically to elongation complex stability and is not involved in the maintenance of RNA-DNA hybrid length

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943606

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943606

Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943606

Dissection of two hallmarks of the open promoter complex by mutation in an RNA polymerase core subunit

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943606

Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943606

A mutant RNA polymerase that forms unusual open promoter complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943606

Termination-altering amino acid substitutions in the beta' subunit of Escherichia coli RNA polymerase identify regions involved in RNA chain elongation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943606

Generality of the branched pathway in transcription initiation by Escherichia coli RNA polymerase.

5 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ355

A role for interaction of the RNA polymerase flap domain with the sigma subunit in promoter recognition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ355

RNA polymerase mutants that destabilize RNA polymerase-promoter complexes alter NTP-sensing by rrn P1 promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ355

Structure-function analysis of the RNA polymerase cleft loops elucidates initial transcription, DNA unwinding and RNA displacement

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ355

Crucial role of the RNA:DNA hybrid in the processivity of transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ355

The beta ' subunit of Escherichia coli RNA polymerase is not required for interaction with initiating nucleotide but is necessary for interaction with rifampicin

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ355

Transcription processivity: protein-DNA interactions holding together the elongation complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ355

The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex

21 January 2018

1 reference

12 December 2020

The downstream DNA jaw of bacterial RNA polymerase facilitates both transcriptional initiation and pausing

1 reference

12 December 2020

[Mutations in beta'-subunit of the Escherichia coli RNA-polymerase influence interaction with downstream duplex DNA in the elongation complex]

1 reference

12 December 2020

Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS

1 reference

12 December 2020

Region 3.2 of the sigma subunit contributes to the binding of the 3'-initiating nucleotide in the RNA polymerase active center and facilitates promoter clearance during initiation

1 reference

12 December 2020

The role of the largest RNA polymerase subunit lid element in preventing the formation of extended RNA-DNA hybrid

1 reference

12 December 2020

Frequency and characterisation of spontaneous lipiarmycin-resistant Enterococcus faecalis mutants selected in vitro

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKQ355

1 reference

31 July 2017

1 reference

31 July 2017

1 reference