(Q34157321)

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The transcriptome of compatible and incompatible interactions of potato (Solanum tuberosum) with Phytophthora infestans revealed by DeepSAGE analysis

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Europe PubMed Central

PubMed publication ID

31 July 2017

The transcriptome of compatible and incompatible interactions of potato (Solanum tuberosum) with Phytophthora infestans revealed by DeepSAGE analysis (English)

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Europe PubMed Central

PubMed publication ID

31 July 2017

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Phytophthora infestans

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Phytophthora infestans

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Birgit Kersten

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Gabor Gyetvai

1

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Europe PubMed Central

PubMed publication ID

31 July 2017

Mads Sønderkær

2

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Europe PubMed Central

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31 July 2017

Ulrike Göbel

3

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Europe PubMed Central

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31 July 2017

Rico Basekow

4

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31 July 2017

Agim Ballvora

5

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Europe PubMed Central

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31 July 2017

Maren Imhoff

6

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Europe PubMed Central

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31 July 2017

Kåre-Lehman Nielsen

8

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31 July 2017

Christiane Gebhardt

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31 July 2017

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6 February 2012

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Europe PubMed Central

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31 July 2017

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Europe PubMed Central

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31 July 2017

7

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Europe PubMed Central

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31 July 2017

2

1 reference

Europe PubMed Central

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31 July 2017

e31526

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Europe PubMed Central

PubMed publication ID

31 July 2017

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Creative Commons Attribution 4.0 International

6 February 2012

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Cytoscape

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Europe PubMed Central

9 June 2022

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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edgeR

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Genome sequence and analysis of the tuber crop potato

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Fibrillin protein function: the tip of the iceberg?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Differential expression analysis for sequence count data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Physical organization of mixed protease inhibitor gene clusters, coordinated expression and association with resistance to late blight at the StKI locus on potato chromosome III.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

baySeq: empirical Bayesian methods for identifying differential expression in sequence count data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Identification of potato genes induced during colonization by Phytophthora infestans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Analysis of differentially expressed genes in a susceptible and moderately resistant potato cultivar upon Phytophthora infestans infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Functional diversity of the plant glycine-rich proteins superfamily

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Shades of gray: the world of quantitative disease resistance.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Phytophthora infestans: the plant (and R gene) destroyer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Effector genomics accelerates discovery and functional profiling of potato disease resistance and phytophthora infestans avirulence genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Systemic acquired resistance: the elusive signal(s)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Natural variation of potato allene oxide synthase 2 causes differential levels of jasmonates and pathogen resistance in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Statistical comparison of two or more SAGE libraries: one tag at a time

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

The impact of next-generation sequencing technology on genetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Jasmonates: an update on biosynthesis, signal transduction and action in plant stress response, growth and development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

DeepSAGE--digital transcriptomics with high sensitivity, simple experimental protocol and multiplexing of samples

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

New perspectives on host-parasite interplay by comparative transcriptomic and proteomic analyses of Schistosoma japonicum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Significance of inducible defense-related proteins in infected plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

The Rpi-blb2 gene from Solanum bulbocastanum is an Mi-1 gene homolog conferring broad-spectrum late blight resistance in potato.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognized in the host cytoplasm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

PoMaMo--a comprehensive database for potato genome data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Statistical modeling of sequencing errors in SAGE libraries

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

An ancient R gene from the wild potato species Solanum bulbocastanum confers broad-spectrum resistance to Phytophthora infestans in cultivated potato and tomato

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Gene RB cloned from Solanum bulbocastanum confers broad spectrum resistance to potato late blight

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Probing plant-pathogen interactions and downstream defense signaling using DNA microarrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Organization of genes controlling disease resistance in the potato genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Gene ontology: tool for the unification of biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

KEGG: kyoto encyclopedia of genes and genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Cloning and expression of transaldolase from potato.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Quantitative resistance to Phytophthora infestans in potato: a case study for QTL mapping in an allogamous plant species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Serial analysis of gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Structural analysis and activation by fungal infection of a gene encoding a pathogenesis-related protein in potato.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

The R1 gene conferring race-specific resistance to Phytophthora infestans in potato is located on potato chromosome V

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Effective vectors for transformation, expression of heterologous genes, and assaying transposon excision in transgenic plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

5 July 2018

Comparative genomics enabled the isolation of the R3a late blight resistance gene in potato.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031526

21 January 2018

The R1 gene for potato resistance to late blight (Phytophthora infestans) belongs to the leucine zipper/NBS/LRR class of plant resistance genes

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031526

21 January 2018

Rpi-vnt1.1, a Tm-2(2) homolog from Solanum venturii, confers resistance to potato late blight

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031526

21 January 2018

The Phytophthora infestans avirulence gene Avr4 encodes an RXLR-dEER effector.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031526

21 January 2018

Exploiting knowledge of R/Avr genes to rapidly clone a new LZ-NBS-LRR family of late blight resistance genes from potato linkage group IV.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031526

21 January 2018

Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031526

21 January 2018

Single nucleotide polymorphisms in the allene oxide synthase 2 gene are associated with field resistance to late blight in populations of tetraploid potato cultivars

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031526

21 January 2018

Plant defense genes associated with quantitative resistance to potato late blight in Solanum phureja x dihaploid S. tuberosum hybrids

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031526

21 January 2018

Primary structure and tissue-specific expression of the pathogenesis-related protein PR-1b in potatodagger

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031526

21 January 2018

The defense-related STH-2 gene product of potato shows race-specific accumulation after inoculation with low concentrations of Phytophthora infestans zoospores

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031526

21 January 2018

Transient Induction of Phenylalanine Ammonia-Lyase and 4-Coumarate: CoA Ligase mRNAs in Potato Leaves Infected with Virulent or Avirulent Races of Phytophthora infestans

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031526

21 January 2018

Comparison of transcript profiles in late blight-challenged Solanum cajamarquense and B3C1 potato clones.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031526

21 January 2018

Gene profiling of a compatible interaction between Phytophthora infestans and Solanum tuberosum suggests a role for carbonic anhydrase.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031526

21 January 2018

Priming: it’s all the world to induced disease resistance

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031526

21 January 2018

New insights into plant transaldolase

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031526

21 January 2018

Plant lipid-associated fibrillin proteins condition jasmonate production under photosynthetic stress.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031526

21 January 2018

A novel link between tomato GRAS genes, plant disease resistance and mechanical stress response

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031526

21 January 2018

Quantification of induced resistance against Phytophthora species expressing GFP as a vital marker: beta-aminobutyric acid but not BTH protects potato and Arabidopsis from infection

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0031526

21 January 2018

Identification and cloning of differentially expressed genes involved in the interaction between potato and Phytophthora infestans using a subtractive hybridization and cDNA-AFLP combinational approach.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3273468

28 October 2018

First-generation SNP/InDel markers tagging loci for pathogen resistance in the potato genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/22328937

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural diversity and organization of three gene families for Kunitz-type enzyme inhibitors from potato tubers (Solanum tuberosum L.).

1 reference

https://pubmed.ncbi.nlm.nih.gov/22328937

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enhanced Polymerase Chain Reaction Methods for Detecting and Quantifying Phytophthora infestans in Plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/22328937

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1371/JOURNAL.PONE.0031526

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

2012PLoSO...731526G

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PMC publication ID

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Europe PubMed Central

PubMed publication ID

31 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

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