(Q34173086)

31 July 2017

Conformational deformability of RNA: a harmonic mode analysis (English)

1 reference

31 July 2017

1 reference

Zacharias M

1

1 reference

PubMed ID

10777750

31 July 2017

Sklenar H

series ordinal

2

1 reference

PubMed ID

10777750

31 July 2017

language of work or name

English

0 references

publication date

1 May 2000

1 reference

31 July 2017

1 reference

31 July 2017

78

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31 July 2017

5

1 reference

31 July 2017

2528-2542

1 reference

Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution

31 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Protein-DNA interactions: A structural analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Vibrational dynamics of transfer RNAs: comparison of the free and synthetase-bound forms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Sequence specificity of bacteriophage 434 repressor-operator complexation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Structural equilibrium of DNA represented with different force fields

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Simulations of the molecular dynamics of nucleic acids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Analysis of the stability of looped-out and stacked-in conformations of an adenine bulge in DNA using a continuum model for solvent and ions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Crystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Crystal structure of a group I ribozyme domain: principles of RNA packing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Solution structure of (rGCGGACGC)2 by two-dimensional NMR and the iterative relaxation matrix approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

RNA hydration: a detailed look

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Observation of the A-DNA to B-DNA transition during unrestrained molecular dynamics in aqueous solution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Dynamics of transfer RNAs analyzed by normal mode calculation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Crystal and molecular structure of r(CGCGAAUUAGCG): an RNA duplex containing two G(anti).A(anti) base pairs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Energetics of DNA twisting. I. Relation between twist and cyclization probability.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

The three-dimensional structure of a DNA duplex containing looped-out bases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

The flexibility of the nucleic acids: (I). "SIR", a novel approach to the variation of polymer geometry in constrained systems.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Harmonic vibrations and thermodynamic stability of a DNA oligomer in monovalent salt solution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Defining the structure of irregular nucleic acids: conventions and principles

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Protein normal-mode dynamics: trypsin inhibitor, crambin, ribonuclease and lysozyme

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Langevin modes of macromolecules: applications to crambin and DNA hexamers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Dependence of the torsional rigidity of DNA on base composition

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Dynamical structure of transfer RNA studied by normal mode analysis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

Conformational analysis of single-base bulges in A-form DNA and RNA using a hierarchical approach and energetic evaluation with a continuum solvent model.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300843

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

28 October 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976798-1

Effect of temperature on DNA secondary structure in the absence and presence of 0.5 M tetramethylammonium chloride

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976798-1

Definitions and nomenclature of nucleic acid structure parameters

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976798-1

B-DNA twisting correlates with base-pair morphology.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976798-1

Influence of drug binding on DNA flexibility: a normal mode analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976798-1

Investigation of the flexibility of DNA using transient electric birefringence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976798-1

Transition from B to Z DNA: contribution of internal fluctuations to the configurational entropy difference

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976798-1

A discussion of the solution for the best rotation to relate two sets of vectors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976798-1

Persistence length of RNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976798-1

NMR structural refinement of an extrahelical adenosine tridecamer d(CGCAGAATTCGCG)2 via a hybrid relaxation matrix procedure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976798-1

Dynamic twisting correlations in a model DNA with uniform torsion elastic constant

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976798-1

Application of the method of phage T4 DNA ligase-catalyzed ring-closure to the study of DNA structure. II. NaCl-dependence of DNA flexibility and helical repeat

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976798-1

Dynamics of DNA oligomers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976798-1

Bulge-induced bends in RNA: quantification by transient electric birefringence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2800%2976798-1

10.1016/S0006-3495(00)76798-1

7 January 2021

Identifiers

DOI

1 reference

31 July 2017

1 reference

31 July 2017

1 reference

PubMed ID

10777750