(Q34177467)

31 July 2017

Intrinsic conformational energetics associated with the glycosyl torsion in DNA: a quantum mechanical study (English)

1 reference

31 July 2017

3

Lennart Nilsson

1 reference

31 July 2017

1

Nicolas Foloppe

1 reference

31 July 2017

Brigitte Hartmann

2

1 reference

PubMed ID

11867468

31 July 2017

Alexander D MacKerell

series ordinal

4

1 reference

PubMed ID

11867468

31 July 2017

language of work or name

English

0 references

publication date

1 March 2002

1 reference

31 July 2017

16

1 reference

based on heuristic

inferred from page(s)

published in

Biophysical Journal

1 reference

31 July 2017

82

1 reference

31 July 2017

3

1 reference

31 July 2017

1554-1569

1 reference

Molecular Configuration in Sodium Thymonucleate

31 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Crystal structure of a DNA Holliday junction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Solution structures of a duplex containing an adenine opposite a gap (absence of one nucleotide). An NMR study and molecular dynamic simulations with explicit water molecules

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Intrinsic conformational properties of deoxyribonucleosides: implicated role for cytosine in the equilibrium among the A, B, and Z forms of DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Protein-DNA interactions: A structural analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Crystal structure of a double-stranded DNA containing a cisplatin interstrand cross-link at 1.63 A resolution: hydration at the platinated site

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

DNA bending: the prevalence of kinkiness and the virtues of normality

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Crystal structure of the nucleosome core particle at 2.8 A resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Unusual DNA conformations.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

C-H...O hydrogen bonding in biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Modelling extreme stretching of DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

The biology of left-handed Z-DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

A study into the effects of protein binding on nucleotide conformation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Crystal structure of an oligonucleotide duplex containing G.G base pairs: influence of mispairing on DNA backbone conformation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Recombination-like structure of d(CCGCGG)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Crystal structure of double-stranded DNA containing the major adduct of the anticancer drug cisplatin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Polymorphism of DNA double helices

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

High-salt d(CpGpCpG), a left-handed Z' DNA double helix

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

The anatomy of A-, B-, and Z-DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

AT base pairs are less stable than GC base pairs in Z-DNA: the crystal structure of d(m5CGTAm5CG)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Salt-induced co-operative conformational change of a synthetic DNA: Equilibrium and kinetic studies with poly(dG-dC)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Crystal and molecular structure of a naturally occurring dinucleoside monophosphate. Uridylyl-(3'-5')-adenosine hemihydrate. Conformational rigidity of the nucleotide unit and models for polynucleotide chain folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Crystal structure of a naturally occurring dinucleoside phosphate: Uridylyl 3′,5′-adenosine phosphate model for RNA chain folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Conformational analysis of the sugar ring in nucleosides and nucleotides. Improved method for the interpretation of proton magnetic resonance coupling constants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Nuclear magnetic resonance studies of 5'-ribo- and deoxyribonucleotide structures in solution.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Molecular orbital calculations on the conformation of nucleic acids and their constituents. I. Conformational energies of beta-nucleosides with C(3')-and C(2')-endo sugars.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Crystal structure of Z-DNA without an alternating purine-pyrimidine sequence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

A computer aided thermodynamic approach for predicting the formation of Z-DNA in naturally occurring sequences

5 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

5 July 2018

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Some rules for predicting the base-sequence dependence of DNA conformation

7 January 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Sequence dependent conformations of oligomeric DNA's in aqueous solutions and in crystals

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Crystal structure of a barnase-d(GpC) complex at 1.9 A resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Soloution conformation of an olionucleotide containing a G.G mismatch determined by nuclear manetic resonance and molecular mechanics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Solution structure of an unusually stable RNA hairpin, 5GGAC(UUCG)GUCC

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Z-RNA: the solution NMR structure of r(CGCGCG).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Quadruplex structure of Oxytricha telomeric DNA oligonucleotides

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Crystal structure of four-stranded Oxytricha telomeric DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

DNA structure from A to Z.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

The Protein Data Bank: a computer-based archival file for macromolecular structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Molecular structure of a left-handed double helical DNA fragment at atomic resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

DNA helix structure and refinement algorithm: comparison of models for d(CCAGGCm5CTGG) derived from NUCLSQ, TNT and X-PLOR.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301954

Conformational analysis of the sugar ring in nucleosides and nucleotides. New description using the concept of pseudorotation

28 October 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

7 January 2021

Left-handed DNA helices

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Conservation of Conformation in Mono and Poly-nucleotides

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Optimised parameters for A-DNA and B-DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Reevaluation of Stereoelectronic Contributions to the Conformational Properties of the Phosphodiester and N3‘-Phosphoramidate Moieties of Nucleic Acids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Density-functional thermochemistry. III. The role of exact exchange

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Molecular orbital calculations on the conformation of nucleic acids and their constituents. II. Conformational energies of nucleosides with C(3')-and C(2')-exo sugars

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Nucleotides: Rigid or flexible?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Ab initio conformational analysis of nucleic acid components: intrinsic energetic contributions to nucleic acid structure and dynamics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

The crystal structure of a hydrogen bonded complex of deoxyguanosine and 5-bromodeoxycytidine

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Nucleoside conformations: an analysis of steric barriers to rotation about the glycosidic bond

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

7 January 2021

Z-DNA crystallography .

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Intramolecular hydrogen bonding in 2′-deoxyribonucleosides: an AIM topological study of the electronic density

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

The peculiar role of cytosine in nucleoside conformational behaviour: Hydrogen bond donor capacity of nucleic bases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Ground-State Properties of Nucleic Acid Constituents Studied by Density Functional Calculations. 3. Role of Sugar Puckering and Base Orientation on the Energetics and Geometry of 2‘-Deoxyribonucleosides and Ribonucleosides

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Stereochemistry of nucleic acids and polynucleotides. II. Allowed conformations of the monomer unit for different ribose puckerings

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Syn-Anti effects on the spatial configuration of polynucleotide chains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Spatial configurations of polynucleotide chains. I. Steric interactions in polyribonucleotides: A virtual bond model

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Spatial configuration of polynucleotide chains. II. Conformational energies and the average dimensions of polyribonucleotides

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Stereochemistry of nucleic acids and their constituents. XIII. Crystal and molecular structure of 3'-O-acetyladenosine. Conformational analysis of nucleosides and nucleotides with syn glycosidic torsional angle

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Nanosecond relaxation processes in aqueous mononucleoside solutions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

A Pyrimidine nucleoside in the syn conformation: Molecular and crystal structure of 4-thiouridine-hydrate

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Molecular orbital calculations on the conformation of nucleic acids and their constituents. IV. Conformations about the exocyclic C(4')-C(5') bond

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Conformations of the sugar-phosphate backbone in helical DNA crystal structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Flexibility and conformations of guanosine monophosphates by the Overhauser effect

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

The C–H… O Hydrogen Bond in Crystals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Crystal and molecular structure of 8-bromoguanosine and 8-bromoadenosine, two purine nucleosides in the syn conformation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Left-handed double helical DNA: variations in the backbone conformation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Nucleoside conformation and non-bonded interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Conformational studies on guanosine nucleotides and polynucleotides. The effect of the base on the glycosyl and backbone conformations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975507-0

Crystallographic evidence for the existence of CH...O, CH...N and CH...Cl hydrogen bonds

7 January 2021

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1021/JA00383A012

10.1016/S0006-3495(02)75507-0

5 March 2023

Identifiers

DOI

1 reference

31 July 2017

1 reference

31 July 2017

1 reference

PubMed ID

11867468