(Q34180662)

31 July 2017

title

Selective excitation of native fluctuations during thermal unfolding simulations: horse heart cytochrome c as a case study (English)

1 reference

31 July 2017

Danilo Roccatano

1

1 reference

31 July 2017

Isabella Daidone

2

1 reference

31 July 2017

Marc-Antoine Ceruso

3

1 reference

31 July 2017

Cecilia Bossa

4

1 reference

31 July 2017

Alfredo Di Nola

5

1 reference

31 July 2017

language of work or name

English

0 references

publication date

1 March 2003

1 reference

31 July 2017

1 reference

31 July 2017

volume

84

1 reference

31 July 2017

issue

3

1 reference

31 July 2017

page(s)

1876-1883

1 reference

Raster3D: photorealistic molecular graphics

31 July 2017

cites work

1 reference

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Molecular dynamics simulations of the protein unfolding/folding reaction

5 July 2018

1 reference

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Conformational landscape of cytochrome c folding studied by microsecond-resolved small-angle x-ray scattering.

5 July 2018

1 reference

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From folding theories to folding proteins: a review and assessment of simulation studies of protein folding and unfolding

5 July 2018

1 reference

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Compactness of the denatured state of a fast-folding protein measured by submillisecond small-angle x-ray scattering

5 July 2018

1 reference

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Partially formed native tertiary interactions in the A-state of cytochrome c.

5 July 2018

1 reference

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Investigating protein dynamics in collective coordinate space

5 July 2018

1 reference

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Mechanics and dynamics of B1 domain of protein G: role of packing and surface hydrophobic residues

5 July 2018

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A molecular dynamics study in explicit water of the reduced and oxidized forms of yeast iso-1-cytochrome c--solvation and dynamic properties of the two oxidation states

5 July 2018

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An extended sampling of the configurational space of HPr from E. coli.

5 July 2018

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An efficient method for sampling the essential subspace of proteins.

5 July 2018

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The consistency of large concerted motions in proteins in molecular dynamics simulations

5 July 2018

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5 July 2018

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Fast events in protein folding initiated by nanosecond laser photolysis

5 July 2018

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5 July 2018

1 reference

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Protein folding intermediates: native-state hydrogen exchange

5 July 2018

1 reference

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Principles of protein folding--a perspective from simple exact models.

5 July 2018

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Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

5 July 2018

1 reference

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A denaturation-induced proton-uptake study of horse ferricytochrome c.

5 July 2018

1 reference

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High-resolution three-dimensional structure of horse heart cytochrome c

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302756

Increasing temperature accelerates protein unfolding without changing the pathway of unfolding

5 July 2018

1 reference

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Investigation of the mechanism of domain closure in citrate synthase by molecular dynamics simulation

28 October 2018

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Effects of core-packing on the structure, function, and mechanics of a four-helix-bundle protein ROP.

28 October 2018

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On the convergence of the conformational coordinates basis set obtained by the essential dynamics analysis of proteins' molecular dynamics simulations.

28 October 2018

1 reference

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Native tertiary structure in an A-state

28 October 2018

1 reference

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Toward an exhaustive sampling of the configurational spaces of the two forms of the peptide hormone guanylin.

28 October 2018

1 reference

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Stepwise formation of alpha-helices during cytochrome c folding

28 October 2018

1 reference

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Molecular dynamics with coupling to an external bath

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974995-9

Side chain packing of the N- and C-terminal helices plays a critical role in the kinetics of cytochrome c folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974995-9

Protein Folding: A Perspective from Theory and Experiment.

7 January 2021

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Conformational dynamics of cytochrome c: Correlation to hydrogen exchange

7 January 2021

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MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

7 January 2021

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A native tertiary interaction stabilizes the A state of cytochrome c

7 January 2021

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Settle: An analytical version of the SHAKE and RATTLE algorithm for rigid water models

7 January 2021

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Large-scale networks of hydration water molecules around bovine beta-trypsin revealed by cryogenic X-ray crystal structure analysis

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974995-9

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974995-9

Evidence for an unfolding and refolding pathway in cytochrome c

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974995-9

Conformational dynamics of cytochrome c: correlation to hydrogen exchange

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12609889

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Energy landscape of a native protein: jumping-among-minima model

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12609889

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/S0006-3495(03)74995-9

1 reference

31 July 2017

1 reference

31 July 2017

1 reference