Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q34182863)
Watch
English
Genome-Wide Analysis of Nascent Transcription in Saccharomyces cerevisiae
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
3276176
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22384366%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 January 2020
title
Genome-Wide Analysis of Nascent Transcription in Saccharomyces cerevisiae
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
3276176
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22384366%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 January 2020
main subject
Saccharomyces cerevisiae
1 reference
based on heuristic
litr
author
Carlos L Araya
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
3276176
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22384366%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 January 2020
author name string
Anastasia McKinlay
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3276176
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22384366%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 January 2020
Stanley Fields
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
3276176
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22384366%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 January 2020
publication date
1 December 2011
1 reference
stated in
Europe PubMed Central
PMC publication ID
3276176
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22384366%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 January 2020
published in
G3
1 reference
stated in
Europe PubMed Central
PMC publication ID
3276176
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22384366%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 January 2020
volume
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3276176
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22384366%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 January 2020
issue
7
1 reference
stated in
Europe PubMed Central
PMC publication ID
3276176
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22384366%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 January 2020
page(s)
549-558
1 reference
stated in
Europe PubMed Central
PMC publication ID
3276176
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22384366%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 January 2020
cites work
Heat shock response in yeast involves changes in both transcription rates and mRNA stabilities
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Nascent transcript sequencing visualizes transcription at nucleotide resolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Comprehensive comparative analysis of strand-specific RNA sequencing methods
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Defining mechanisms that regulate RNA polymerase II transcription in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Regulon-specific control of transcription elongation across the yeast genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Transcriptome analysis by strand-specific sequencing of complementary DNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Conserved principles of mammalian transcriptional regulation revealed by RNA half-life
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Bidirectional promoters generate pervasive transcription in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
The transcriptional landscape of the yeast genome defined by RNA sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Elongation by RNA polymerase II: the short and long of it
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Genomic run-on evaluates transcription rates for all yeast genes and identifies gene regulatory mechanisms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Genome-wide analysis of the biology of stress responses through heat shock transcription factor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Precision and functional specificity in mRNA decay
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Genomic expression programs in the response of yeast cells to environmental changes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Transcriptional pause, arrest and termination sites for RNA polymerase II in mammalian N- and c-myc genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Transcriptional pausing at +62 of the HIV-1 nascent RNA modulates formation of the TAR RNA structure
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Analyses of promoter-proximal pausing by RNA polymerase II on the hsp70 heat shock gene promoter in a Drosophila nuclear extract
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
The yeast genome project: what did we learn?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Rapid changes in Drosophila transcription after an instantaneous heat shock
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
In vivo transcriptional pausing and cap formation on three Drosophila heat shock genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Deficient induction of human hsp70 heat shock gene transcription in Y79 retinoblastoma cells despite activation of heat shock factor 1.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Cell-cycle regulation of yeast histone mRNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Activation of pS2 gene transcription is a primary response to estrogen in the human breast cancer cell line MCF-7.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Clustering of RNA polymerase B molecules in the 5′ moiety of the adult β-globin gene of hen erythrocytes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Posttranscriptional regulation of hsp70 expression in human cells: effects of heat shock, inhibition of protein synthesis, and adenovirus infection on translation and mRNA stability
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Separation and partial characterization of three functional steps in transcription initiation by human RNA polymerase II.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
Postinitiation transcriptional control in Drosophila melanogaster
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
5 July 2018
A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
28 October 2018
Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
28 October 2018
Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
28 October 2018
Global Analysis of Nascent RNA Reveals Transcriptional Pausing in Terminal Exons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3276176
retrieved
28 October 2018
Nuclear run-on assay using biotin labeling, magnetic bead capture and analysis by fluorescence-based RT-PCR
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22384366
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A block of transcription elongation by RNA polymerase II at synthetic sites in vitro
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22384366
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1534/G3.111.000810
1 reference
stated in
Europe PubMed Central
PMC publication ID
3276176
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22384366%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 January 2020
PMC publication ID
3276176
1 reference
stated in
Europe PubMed Central
PMC publication ID
3276176
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22384366%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 January 2020
PubMed publication ID
22384366
1 reference
stated in
Europe PubMed Central
PMC publication ID
3276176
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22384366%20AND%20SRC:MED&resulttype=core&format=json
retrieved
24 January 2020
ResearchGate publication ID
221882963
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
