(Q34183449)

31 July 2017

title

Molecular dynamics simulation of protein folding by essential dynamics sampling: folding landscape of horse heart cytochrome c (English)

1 reference

31 July 2017

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Isabella Daidone

1

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31 July 2017

Andrea Amadei

series ordinal

2

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31 July 2017

Danilo Roccatano

series ordinal

3

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31 July 2017

Alfredo Di Nola

series ordinal

4

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31 July 2017

language of work or name

English

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publication date

1 November 2003

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31 July 2017

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31 July 2017

volume

85

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31 July 2017

issue

5

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31 July 2017

page(s)

2865-2871

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Selective excitation of native fluctuations during thermal unfolding simulations: horse heart cytochrome c as a case study

31 July 2017

cites work

1 reference

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5 July 2018

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Conformational landscape of cytochrome c folding studied by microsecond-resolved small-angle x-ray scattering.

5 July 2018

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From folding theories to folding proteins: a review and assessment of simulation studies of protein folding and unfolding

5 July 2018

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Protein folding and unfolding in microseconds to nanoseconds by experiment and simulation

5 July 2018

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Staphylococcal protein A: unfolding pathways, unfolded states, and differences between the B and E domains

5 July 2018

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Transient dimer in the refolding kinetics of cytochrome c characterized by small-angle X-ray scattering

5 July 2018

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Compactness of the denatured state of a fast-folding protein measured by submillisecond small-angle x-ray scattering

5 July 2018

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5 July 2018

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The fundamentals of protein folding: bringing together theory and experiment

5 July 2018

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Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

5 July 2018

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A continuous-flow capillary mixing method to monitor reactions on the microsecond time scale.

5 July 2018

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Theory of protein folding: the energy landscape perspective

5 July 2018

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Molecular switch in signal transduction: reaction paths of the conformational changes in ras p21.

5 July 2018

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Exploring the folding free energy surface of a three-helix bundle protein

5 July 2018

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Calculation of pathways for the conformational transition between the GTP- and GDP-bound states of the Ha-ras-p21 protein: calculations with explicit solvent simulations and comparison with calculations in vacuum.

5 July 2018

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5 July 2018

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An efficient method for sampling the essential subspace of proteins.

5 July 2018

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Essential dynamics of proteins

5 July 2018

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‘Molten‐globule state’: a compact form of globular proteins with mobile side‐chains

5 July 2018

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High-resolution three-dimensional structure of horse heart cytochrome c

5 July 2018

1 reference

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Mapping the cytochrome C folding landscape

5 July 2018

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Direct comparison of experimental and calculated folding free energies for hydrophobic deletion mutants of chymotrypsin inhibitor 2: free energy perturbation calculations using transition and denatured states from molecular dynamics simulations of u

28 October 2018

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28 October 2018

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Toward an exhaustive sampling of the configurational spaces of the two forms of the peptide hormone guanylin.

28 October 2018

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Stepwise formation of alpha-helices during cytochrome c folding

28 October 2018

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First-principles calculation of the folding free energy of a three-helix bundle protein

7 January 2021

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Side chain packing of the N- and C-terminal helices plays a critical role in the kinetics of cytochrome c folding

7 January 2021

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Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

7 January 2021

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Computer simulations of protein folding by targeted molecular dynamics

7 January 2021

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Can protein unfolding simulate protein folding?

7 January 2021

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Large-amplitude nonlinear motions in proteins

7 January 2021

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7 January 2021

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Calculations on folding of segment B1 of streptococcal protein G

7 January 2021

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Evidence for an unfolding and refolding pathway in cytochrome c

7 January 2021

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10.1016/S0006-3495(03)74709-2

7 January 2021

Identifiers

DOI

1 reference

31 July 2017

1 reference

31 July 2017

1 reference