(Q34184319)

English

Comparison of the effect of water release on the interaction of the Saccharomyces cerevisiae TATA binding protein (TBP) with "TATA Box" sequences composed of adenosine or inosine.

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14695279%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

Comparison of the effect of water release on the interaction of the Saccharomyces cerevisiae TATA binding protein (TBP) with "TATA Box" sequences composed of adenosine or inosine (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14695279%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

Saccharomyces cerevisiae

1 reference

based on heuristic

inferred from title

Sergei Khrapunov

1

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14695279%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

author name string

Michael Brenowitz

2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14695279%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

language of work or name

0 references

publication date

1 January 2004

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14695279%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

Biophysical Journal

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14695279%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

86

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14695279%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

1 Pt 1

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14695279%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

371-383

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14695279%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

DNA bending by bZIP charge variants: a unified study using electrophoretic phasing and fluorescence resonance energy transfer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Assessing accumulated solvent near a macromolecular solute by preferential interaction coefficients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Time-resolved fluorescence resonance energy transfer studies of DNA bending in double-stranded oligonucleotides and in DNA-protein complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Time-resolved fluorescence resonance energy transfer: a versatile tool for the analysis of nucleic acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Critical effect of the N2 amino group on structure, dynamics, and elasticity of DNA polypurine tracts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Comparison of TATA-binding protein recognition of a variant and consensus DNA promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Solution structure of an A-tract DNA bend

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Fluorescence energy transfer analysis of DNA structures containing several bulges and their interaction with CAP.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Signals for TBP/TATA box recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

A quantitative method for evaluating the stabilities of nucleic acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

The importance of coulombic end effects: experimental characterization of the effects of oligonucleotide flanking charges on the strength and salt dependence of oligocation (L8+) binding to single-stranded DNA oligomers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

In disperse solution, "osmotic stress" is a restricted case of preferential interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Monitoring conformational dynamics of a single molecule by selective fluorescence spectroscopy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Conformational fluctuations in single DNA molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Functional significance of the TATA element major groove in transcription initiation by RNA polymerase II

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Fluorescence resonance energy transfer as a probe of DNA structure and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

X-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Differences in water release for the binding of EcoRI to specific and nonspecific DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Biochemistry and structural biology of transcription factor IID (TFIID)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Conformational transitions monitored for single molecules in solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Simultaneous binding and bending of promoter DNA by the TATA binding protein: real time kinetic measurements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Macromolecules and water: probing with osmotic stress

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Co-crystal structure of TBP recognizing the minor groove of a TATA element

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Crystal structure of a yeast TBP/TATA-box complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Yeast TATA binding protein interaction with DNA: fluorescence determination of oligomeric state, equilibrium binding, on-rate, and dissociation kinetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Ions as regulators of protein-nucleic acid interactions in vitro and in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Interaction of TFIID in the minor groove of the TATA element

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

TFIID binds in the minor groove of the TATA box

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Kinetic analysis of yeast TFIID-TATA box complex formation suggests a multi-step pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Global features of DNA structure by comparative gel electrophoresis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Transcription factors: structural families and principles of DNA recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

Fluorescence resonance energy transfer and nucleic acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

5 July 2018

The Entropic Cost of Bound Water in Crystals and Biomolecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

28 October 2018

Role of hydration in the binding of lac repressor to DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

28 October 2018

Solution structural studies of the Saccharomyces cerevisiae TATA binding protein (TBP).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

28 October 2018

Linkage of EcoRI dissociation from its specific DNA recognition site to water activity, salt concentration, and pH: separating their roles in specific and non-specific binding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

28 October 2018

Specific and non-specific interactions of integration host factor with DNA: thermodynamic evidence for disruption of multiple IHF surface salt-bridges coupled to DNA binding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

28 October 2018

Dynamic simulations of 13 TATA variants refine kinetic hypotheses of sequence/activity relationships

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

28 October 2018

TIT for TAT: the properties of inosine and adenosine in TATA box DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

28 October 2018

Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

28 October 2018

Fluorescence approaches to study of protein-nucleic acid complexation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

28 October 2018

Conformational flexibility of three-way DNA junctions containing unpaired nucleotides.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

28 October 2018

Translational positioning of nucleosomes on DNA: the role of sequence-dependent isotropic DNA bending stiffness.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303802

28 October 2018

Vapor pressure osmometry studies of osmolyte-protein interactions: implications for the action of osmoprotectants in vivo and for the interpretation of "osmotic stress" experiments in vitro

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

The TATA-binding protein from Saccharomyces cerevisiae oligomerizes in solution at micromolar concentrations to form tetramers and octamers

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

Participation of the amino-terminal domain in the self-association of the full-length yeast TATA binding protein

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

TATA box DNA deformation with and without the TATA box-binding protein

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

Structural and thermodynamic strategies for site-specific DNA binding proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

Chemical determinants of DNA bending at adenine-thymine tracts

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

Sensitive fluorescence-based thermodynamic and kinetic measurements of DNA hybridization in solution

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

Intermediate species possessing bent DNA are present along the pathway to formation of a final TBP-TATA complex

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

Pre-bending of a promoter sequence enhances affinity for the TATA-binding factor

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

A detailed interpretation of OH radical footprints in a TBP-DNA complex reveals the role of dynamics in the mechanism of sequence-specific binding

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

Thermodynamic and Kinetic Characterization of the Binding of the TATA Binding Protein to the Adenovirus E4 Promoter

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

DNA sequence-specific recognition by the Saccharomyces cerevisiae "TATA" binding protein: promoter-dependent differences in the thermodynamics and kinetics of binding

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

Marked stepwise differences within a common kinetic mechanism characterize TATA-binding protein interactions with two consensus promoters

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

DNA bending is an important component of site-specific recognition by the TATA binding protein

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

Global structure of three-way DNA junctions with and without additional unpaired bases: a fluorescence resonance energy transfer analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

DNA curvature in solution measured by fluorescence resonance energy transfer

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

Role of macromolecular hydration in the binding of the Escherichia coli cyclic AMP receptor to DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

Intrinsic Bending in GGCC Tracts as Probed by Fluorescence Resonance Energy Transfer

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

DNA bends in TATA-binding protein-TATA complexes in solution are DNA sequence-dependent

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

DNA sequence-dependent differences in TATA-binding protein-induced DNA bending in solution are highly sensitive to osmolytes

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974113-2

7 January 2021

Identifiers

10.1016/S0006-3495(04)74113-2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14695279%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14695279%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14695279%20AND%20SRC:MED&resulttype=core&format=json

17 November 2019

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q34184319&oldid=1984131768"