(Q52216942)

27 April 2018

title

TIT for TAT: the properties of inosine and adenosine in TATA box DNA. (English)

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27 April 2018

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Pastor N

1

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27 April 2018

MacKerell AD Jr

series ordinal

2

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27 April 2018

Weinstein H

series ordinal

3

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27 April 2018

publication date

1 February 1999

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27 April 2018

Journal of Biomolecular Structure and Dynamics

published in

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27 April 2018

volume

16

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27 April 2018

issue

4

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27 April 2018

page(s)

787-810

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27 April 2018

DNA conformation and protein binding

cites work

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

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21 January 2018

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Crystal structure of a yeast TBP/TATA-box complex

21 January 2018

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1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG

21 January 2018

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The 2.1-A crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box

21 January 2018

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Crystal structure of a TFIIB-TBP-TATA-element ternary complex

21 January 2018

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Crystal structure of a human TATA box-binding protein/TATA element complex

21 January 2018

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Crystal structure of a yeast TFIIA/TBP/DNA complex

21 January 2018

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The flexibility of alternating dA-dT sequences

21 January 2018

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Dependence of DNA helix flexibility on base composition.

21 January 2018

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A hypothesis on a specific sequence-dependent conformation of DNA and its relation to the binding of the lac-repressor protein

21 January 2018

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Solution structure of [d(A-T)5]2 via complete relaxation matrix analysis of two-dimensional nuclear Overhauser effect spectra and molecular mechanics calculations: evidence for a hydration tunnel

21 January 2018

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Solution structure of [d(GGTATACC)]2: wrinkled D structure of the TATA moiety

21 January 2018

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Structure of an alternating-B DNA helix and its relationship to A-tract DNA

21 January 2018

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Alternative structures for alternating poly(dA-dT) tracts: the structure of the B-DNA decamer C-G-A-T-A-T-A-T-C-G

21 January 2018

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X-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature

21 January 2018

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21 January 2018

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DNA bending at adenine . thymine tracts

21 January 2018

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Sequence-directed curvature of DNA.

21 January 2018

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A bifurcated hydrogen-bonded conformation in the d(A.T) base pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin

21 January 2018

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Crystal lattice packing is important in determining the bend of a DNA dodecamer containing an adenine tract

21 January 2018

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A DNA dodecamer containing an adenine tract crystallizes in a unique lattice and exhibits a new bend

21 January 2018

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The structure of an oligo(dA).oligo(dT) tract and its biological implications

21 January 2018

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Calibration of DNA curvature and a unified description of sequence-directed bending

21 January 2018

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Global features of DNA structure by comparative gel electrophoresis

21 January 2018

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Structural basis for DNA bending

21 January 2018

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Determination of the extent of DNA bending by an adenine-thymine tract

21 January 2018

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Nucleosome cores reconstituted from poly (dA-dT) and the octamer of histones

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

What is the basis of sequence-directed curvature in DNAs containing A tracts?

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Dehydrating agents sharply reduce curvature in DNAs containing A tracts

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

The effect of crystal packing on oligonucleotide double helix structure

21 January 2018

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https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

"...the tyranny of the lattice...".

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

MPD and DNA bending in crystals and in solution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Molecular modelling of (A4T4NN)n and (T4A4NN)n: sequence elements responsible for curvature.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Static and Dynamic Conformational Properties of AT sequences in B-DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

TFIID binds in the minor groove of the TATA box

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

The influence of exocyclic substituents of purine bases on DNA curvature

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

DNA curvature does not require bifurcated hydrogen bonds or pyrimidine methyl groups

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Crystal structure of a B-DNA dodecamer containing inosine, d(CGCIAATTCGCG), at 2.4 A resolution and its comparison with other B-DNA dodecamers

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Does TATA matter? A structural exploration of the selectivity determinants in its complexes with TATA box-binding protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

TBP binds the transcriptionally inactive TA5 sequence but the resulting complex is not efficiently recognised by TFIIB and TFIIA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Defining the structure of irregular nucleic acids: conventions and principles

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Conformational and helicoidal analysis of 30 PS of molecular dynamics on the d(CGCGAATTCGCG) double helix: "curves", dials and windows.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Structural chemistry of biomolecular hydration via computer simulation: the proximity criterion.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Bending and curvature calculations in B-DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Conformational sub-states in B-DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Simulating DNA at low resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Static and statistical bending of DNA evaluated by Monte Carlo simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

The intrinsic curvature of DNA in solution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Origin of DNA helical structure and its sequence dependence

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Sequence dependence of DNA conformational flexibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Interdependence of conformational variables in double-helical DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

A free energy analysis of nucleic acid base stacking in aqueous solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

The interpretation of protein structures: Estimation of static accessibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Free energy of burying hydrophobic residues in the interface between protein subunits.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Relationship between curved DNA conformations and slow gel migration

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Hydrophobic interactions in the major groove can influence DNA local structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

The Entropic Cost of Bound Water in Crystals and Biomolecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Hydration of DNA in aqueous solution: NMR evidence for a kinetic destabilization of the minor groove hydration of d-(TTAA)2 versus d-(AATT)2 segments

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

Structure of the B-DNA Oligomers d(CGCTAGCG) and d(CGCTCTAGAGCG) in New Crystal Forms†

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1999.10508293

10.1080/07391102.1999.10508293

21 January 2018

Identifiers

DOI

1 reference

27 April 2018

PubMed ID

10217450

1 reference

27 April 2018