(Q34211331)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25253206%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

title

ProbeAlign: incorporating high-throughput sequencing-based structure probing information into ncRNA homology search (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25253206%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

1 reference

high-throughput sequencing

1 reference

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25253206%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

author name string

Ping Ge

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25253206%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Cuncong Zhong

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25253206%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

publication date

10 September 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25253206%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25253206%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

volume

15 Suppl 9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25253206%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

page(s)

S15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25253206%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

19 February 2020

Bayes' theorem

1 reference

18 June 2022

https://europepmc.org/article/PMC/4168714

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Infernal 1.1: 100-fold faster RNA homology searches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Non-polyadenylated transcription in embryonic stem cells reveals novel non-coding RNA related to pluripotency and differentiation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Incorporating phylogenetic-based covarying mutations into RNAalifold for RNA consensus structure prediction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Rfam 11.0: 10 years of RNA families

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Integrating chemical footprinting data into RNA secondary structure prediction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

An integrated encyclopedia of DNA elements in the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Analysis of energy-based algorithms for RNA secondary structure prediction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Genome-wide measurement of RNA secondary structure in yeast

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

RNAstructure: software for RNA secondary structure prediction and analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

RNAz 2.0: improved noncoding RNA detection.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Finding non-coding RNAs through genome-scale clustering.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Long non-coding RNAs: insights into functions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Non-coding RNA annotation of the genome of Trichoplax adhaerens

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Accurate SHAPE-directed RNA structure determination

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

A simple principle to explain the evolution of pre-mRNA splicing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Identification and classification of conserved RNA secondary structures in the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Fast and reliable prediction of noncoding RNAs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Mfold web server for nucleic acid folding and hybridization prediction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

An expanding universe of noncoding RNAs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Non–coding RNA genes and the modern RNA world

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

SnoRNA-guided ribose methylation of rRNA: structural features of the guide RNA duplex influencing the extent of the reaction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Riboswitches as versatile gene control elements

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S9-S15

Ribozyme structures and mechanisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S9-S15

Structural insights into SRP RNA: an induced fit mechanism for SRP assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S9-S15

Most of the human genome is transcribed.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S9-S15

Global analysis of RNA secondary structure in two metazoans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S9-S15

Repbase Update, a database of eukaryotic repetitive elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S9-S15

RSEARCH: finding homologs of single structured RNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S9-S15

GenRGenS: software for generating random genomic sequences and structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S9-S15

In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

RNA consensus structure prediction with RNAalifold

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

FastR: fast database search tool for non-coding RNA.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168714

10.1186/1471-2105-15-S9-S15

28 October 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25253206%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

DBLP publication ID

journals/bmcbi/GeZZ14

1 reference

DBLP Dataset 2021-01-02

release_mglfqrmxpjcljkf7b7sqmf3ymi

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/mglfqrmxpjcljkf7b7sqmf3ymi

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25253206%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

PubMed publication ID

25253206

1 reference