(Q34231006)

31 July 2017

title

Expansion and diversification of the SET domain gene family following whole-genome duplications in Populus trichocarpa (English)

1 reference

31 July 2017

Populus trichocarpa

1 reference

based on heuristic

inferred from title

whole genome duplication

1 reference

based on heuristic

inferred from title

whole genome sequencing

1 reference

Li Lei

1

1 reference

31 July 2017

Shi-Liang Zhou

series ordinal

2

1 reference

31 July 2017

Hong Ma

series ordinal

3

1 reference

31 July 2017

Liang-Sheng Zhang

series ordinal

4

1 reference

31 July 2017

language of work or name

1 reference

12 April 2012

1 reference

31 July 2017

published in

BMC Evolutionary Biology

1 reference

31 July 2017

volume

12

1 reference

31 July 2017

page(s)

51

1 reference

Divergence of duplicate genes in exon-intron structure

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Organ and cell type-specific complementary expression patterns and regulatory neofunctionalization between duplicated genes in Arabidopsis thaliana

6 July 2018

1 reference

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Ancestral polyploidy in seed plants and angiosperms

6 July 2018

1 reference

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Journey through the past: 150 million years of plant genome evolution

6 July 2018

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Phylogenetics and evolution of Su(var)3-9 SET genes in land plants: rapid diversification in structure and function

6 July 2018

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Regulation of chromatin by histone modifications

6 July 2018

1 reference

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Genome-wide analysis of the SET DOMAIN GROUP family in grapevine.

6 July 2018

1 reference

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Epigenetic modifications in plants: an evolutionary perspective

6 July 2018

1 reference

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Arabidopsis SET DOMAIN GROUP2 is required for H3K4 trimethylation and is crucial for both sporophyte and gametophyte development.

6 July 2018

1 reference

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SET DOMAIN GROUP2 is the major histone H3 lysine [corrected] 4 trimethyltransferase in Arabidopsis

6 July 2018

1 reference

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Maintenance of duplicate genes and their functional redundancy by reduced expression

6 July 2018

1 reference

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6 July 2018

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RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome

6 July 2018

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Rapid diversification of cell signaling phenotypes by modular domain recombination

6 July 2018

1 reference

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Histone methylation in higher plants

6 July 2018

1 reference

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The evolution of gene duplications: classifying and distinguishing between models

6 July 2018

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The evolutionary significance of ancient genome duplications

6 July 2018

1 reference

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Epigenetic transcriptional repression of cellular genes by a viral SET protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification

6 July 2018

1 reference

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Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

The Pfam protein families database

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Plant SET domain-containing proteins: structure, function and regulation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

PAML 4: phylogenetic analysis by maximum likelihood

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Populus: a model system for plant biology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

The generation of new protein functions by the combination of domains

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Current topics in genome evolution: molecular mechanisms of new gene formation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Origin of the bacterial SET domain genes: vertical or horizontal?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Silencing by plant Polycomb-group genes requires dispersed trimethylation of histone H3 at lysine 27.

6 July 2018

1 reference

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TM4 microarray software suite

6 July 2018

1 reference

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PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Pfam: clans, web tools and services

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

The SET-domain protein superfamily: protein lysine methyltransferases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Modeling gene and genome duplications in eukaryotes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis

6 July 2018

1 reference

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

6 July 2018

1 reference

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Poplar genome sequence: functional genomics in an ecologically dominant plant species

6 July 2018

1 reference

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

6 July 2018

1 reference

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MrBayes 3: Bayesian phylogenetic inference under mixed models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Dosage sensitivity and the evolution of gene families in yeast

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Evolution of the protein repertoire

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Methylation of H3-lysine 79 is mediated by a new family of HMTases without a SET domain

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

The evolutionary fate and consequences of duplicate genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Preservation of duplicate genes by complementary, degenerative mutations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Profile hidden Markov models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Maternal control of embryogenesis by MEDEA, a polycomb group gene in Arabidopsis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

A Polycomb-group gene regulates homeotic gene expression in Arabidopsis

6 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-51

ATX-1, an Arabidopsis homolog of trithorax, activates flower homeotic genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-51

ARABIDOPSIS TRITHORAX-RELATED7 is required for methylation of lysine 4 of histone H3 and for transcriptional activation of FLOWERING LOCUS C.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-51

Synteny and Collinearity in Plant Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-51

The histone methyltransferase SDG8 regulates shoot branching in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-51

GLUE-IT and PEDEL-AA: new programmes for analyzing protein diversity in randomized libraries

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-51

[Genome-wide identification, classification and expression analyses of SET domain gene family in Arabidopsis and rice].

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Expansion and diversification of the Populus R2R3-MYB family of transcription factors

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

GSDS: a gene structure display server

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Prevention of early flowering by expression of FLOWERING LOCUS C requires methylation of histone H3 K36.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3402991

Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22497662

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2148-12-51

1 reference

Dimensions Publication ID

31 July 2017

0 references

1 reference

31 July 2017

1 reference