(Q34244862)

31 July 2017

title

High-resolution protein folding with a transferable potential (English)

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31 July 2017

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Eugene I. Shakhnovich

series ordinal

3

object named as

Eugene I Shakhnovich

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31 July 2017

Isaac A Hubner

1

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31 July 2017

Eric J Deeds

series ordinal

2

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31 July 2017

language of work or name

English

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publication date

19 December 2005

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Proceedings of the National Academy of Sciences of the United States of America

31 July 2017

published in

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31 July 2017

volume

102

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31 July 2017

issue

52

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31 July 2017

page(s)

18914-18919

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Geometric and physical considerations for realistic protein models.

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

Ab initio simulations of protein-folding pathways by molecular dynamics with the united-residue model of polypeptide chains

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

An all-atom force field for tertiary structure prediction of helical proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

Theory of protein folding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

SPICKER: a clustering approach to identify near-native protein folds

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

Water in protein structure prediction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

Folding a protein in a computer: An atomic description of the folding/unfolding of protein A

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

Rosetta predictions in CASP5: successes, failures, and prospects for complete automation.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

Simulation of folding of a small alpha-helical protein in atomistic detail using worldwide-distributed computing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

A structure-based method for derivation of all-atom potentials for protein folding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

Improving the performance of Rosetta using multiple sequence alignment information and global measures of hydrophobic core formation.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

Go-ing for the prediction of protein folding mechanisms

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

Clustering of low-energy conformations near the native structures of small proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

What is the probability of a chance prediction of a protein structure with an rmsd of 6 A?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

Pathways for protein folding: is a new view needed?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

How to derive a protein folding potential? A new approach to an old problem

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

Principles that govern the folding of protein chains

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

Spin glasses and the statistical mechanics of protein folding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

Atomically detailed folding simulation of the B domain of staphylococcal protein A from random structures

28 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502181102

Energy-based de novo protein folding by conformational space annealing and an off-lattice united-residue force field: application to the 10-55 fragment of staphylococcal protein A and to apo calbindin D9K.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502181102

Optimizing physical energy functions for protein folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502181102

Protein structure prediction by global optimization of a potential energy function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502181102

The ensemble folding kinetics of protein G from an all-atom Monte Carlo simulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502181102

Nucleation and the transition state of the SH3 domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502181102

Geometry and physics of proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502181102

Assessment of progress over the CASP experiments

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

Protein folding simulation with solvent-induced force field: folding pathway ensemble of three-helix-bundle proteins

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

28 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502181102

Folding of a small helical protein using hydrogen bonds and hydrophobicity forces

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0502181102

Interpreting the folding kinetics of helical proteins

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1323145

The folding thermodynamics and kinetics of crambin using an all-atom Monte Carlo simulation

28 October 2018

1 reference

12 December 2020

Ab initio folding of helix bundle proteins using molecular dynamics simulations

1 reference

12 December 2020

The protein folding network

1 reference

12 December 2020

Formation of unique structure in polypeptide chains. Theoretical investigation with the aid of a replica approach

1 reference

12 December 2020

Theoretical studies of protein-folding thermodynamics and kinetics

1 reference

12 December 2020

Statistical mechanics of proteins with "evolutionary selected" sequences

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0502181102

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31 July 2017

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31 July 2017

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