(Q34255824)

24267787

31 July 2017

title

Combining de novo and reference-guided assembly with scaffold_builder (English)

1 reference

31 July 2017

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267787%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Robert A Edwards

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267787%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

6

Elizabeth A Dinsdale

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267787%20AND%20SRC:MED&resulttype=core&format=json

Genivaldo Gueiros Z Silva

8 June 2020

1

object named as

Genivaldo Gz Silva

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267787%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

author name string

T David Matthews

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267787%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Keri Elkins

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267787%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Robert Schmieder

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267787%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

publication date

22 November 2013

1 reference

24267787

Source Code for Biology and Medicine

31 July 2017

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267787%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

volume

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267787%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267787%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

page(s)

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267787%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

8 June 2020

MIRA

object named as

MIRA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Microbes, metagenomes and marine mammals: enabling the next generation of scientist to enter the genomic era.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

Scaffolder - software for manual genome scaffolding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

GemSIM: general, error-model based simulator of next-generation sequencing data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

Opera: reconstructing optimal genomic scaffolds with high-throughput paired-end sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

Local mobile gene pools rapidly cross species boundaries to create endemicity within global Vibrio cholerae populations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

Scaffolding pre-assembled contigs using SSPACE

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

Chromosomal rearrangements formed by rrn recombination do not improve replichore balance in host-specific Salmonella enterica serovars

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

Fitness effects of replichore imbalance in Salmonella enterica.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

A window into third-generation sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

Assisted assembly: how to improve a de novo genome assembly by using related species

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

ABACAS: algorithm-based automatic contiguation of assembled sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

Versatile and open software for comparing large genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

Projector: automatic contig mapping for gap closure purposes.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

Rapid approach to determine rrn arrangement in Salmonella serovars

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

A general method applicable to the search for similarities in the amino acid sequence of two proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

Basic local alignment search tool

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

De novo sequencing of plant genomes using second-generation technologies

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1751-0473-8-23

Comparative genomics of closely related salmonellae

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1751-0473-8-23

Comparative genome assembly.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1751-0473-8-23

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1751-0473-8-23

progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1751-0473-8-23

Genome sequencing in microfabricated high-density picolitre reactors

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4177539

28 October 2018

Identifiers

DOI

10.1186/1751-0473-8-23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267787%20AND%20SRC:MED&resulttype=core&format=json

journals/scfbm/SilvaDMESDE13

8 June 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1024957855

0 references

Fatcat ID

release_4w5gfasagreuhjninngttgvk6i

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/4w5gfasagreuhjninngttgvk6i

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267787%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

24267787

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267787%20AND%20SRC:MED&resulttype=core&format=json