(Q34274480)

1 August 2017

title

RuleBender: integrated modeling, simulation and visualization for rule-based intracellular biochemistry (English)

1 reference

1 August 2017

1 reference

5

G Elisabeta Marai

1 reference

1 August 2017

Adam M Smith

1

1 reference

1 August 2017

Wen Xu

series ordinal

2

1 reference

1 August 2017

Yao Sun

series ordinal

3

1 reference

1 August 2017

James R Faeder

series ordinal

4

1 reference

1 August 2017

publication date

18 May 2012

1 reference

1 August 2017

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1 August 2017

volume

13 Suppl 8

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1 August 2017

page(s)

S3

1 reference

Creative Commons Attribution 2.0 Generic

1 August 2017

copyright license

start time

18 May 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

object named as

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Efficient modeling, simulation and coarse-graining of biological complexity with NFsim

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355338

Bubble sets: revealing set relations with isocontours over existing visualizations.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355338

GeneShelf: a web-based visual interface for large gene expression time-series data repositories

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355338

The Systems Biology Graphical Notation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355338

Simulation of large-scale rule-based models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355338

Visualization, documentation, analysis, and communication of large-scale gene regulatory networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355338

Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355338

Rules for modeling signal-transduction systems

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355338

Molecular interaction maps of bioregulatory networks: a general rubric for systems biology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355338

An ontology for collaborative construction and analysis of cellular pathways.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355338

Next generation simulation tools: the Systems Biology Workbench and BioSPICE integration

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355338

Cytoscape: a software environment for integrated models of biomolecular interaction networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355338

PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355338

GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355338

A basis for a visual language for describing, archiving and analyzing functional models of complex biological systems

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355338

Organizing and computing metabolic pathway data in terms of binary relations.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355338

New computational approaches for analysis of cis-regulatory networks.

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-13-S8-S3

Investigation of early events in Fc epsilon RI-mediated signaling using a detailed mathematical model

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355338

GSCope: a clipped fisheye viewer effective for highly complicated biomolecular network graphs

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22607382

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Using process diagrams for the graphical representation of biological networks

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22607382

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-13-S8-S3

1 reference

journals/bmcbi/SmithXSFM12

1 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1006088354

0 references

Fatcat ID

release_t4gl6i5m3zga3dhnpt2eypxzym

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/t4gl6i5m3zga3dhnpt2eypxzym

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

3355338

1 reference

1 August 2017

1 reference